Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq96 369 4e-97 seq938 82.4 9e-11 >seq96 Length=556063 Score = 369 bits (408), Expect = 4e-97 Identities = 524/737 (71%), Gaps = 0/737 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || |||||||| |||||||| || |||||||| || |||| ||||| ||| ||| | Sbjct 6959 AGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCTTTCCTTGTGCCTATTTC 7018 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| || || || || || || || |||||||| || | | | Sbjct 7019 GCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGAATTA 7078 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || || |||||| | || | |||||||| ||||| || | Sbjct 7079 GCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAGTTTCCACTCCGGCTAAT 7138 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | || ||| | || | |||||||||||| | | ||||| ||||| | || Sbjct 7139 AGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCACAAGGAGACTTTACTCGT 7198 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||||||||||| || || || || || || | ||| ||| Sbjct 7199 TGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATGGCGCTTTCGGACTAATA 7258 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCT 165539 ||||| ||| | || || |||||||| || ||| ||| | || ||||| ||||| Sbjct 7259 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCAATTGCGACCTTATAATGCA 7318 Query 165540 ATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGA 165599 || || |||||| ||| |||| ||| || ||| ||| || || || ||||| || || Sbjct 7319 ATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATTCCTAATTTATCCGCTAGGT 7378 Query 165600 CAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTC 165659 || | ||||| || || || || || || ||||| || || |||||| | ||| Sbjct 7379 CAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTC 7438 Query 165660 TTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGT 165719 || |||||||||| ||||| ||||| |||| || ||||| |||||||| || || || Sbjct 7439 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCTGGG 7498 Query 165720 ATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTAT 165779 | || |||| || || | | ||| |||||||||| ||| |||| |||||||| | | Sbjct 7499 GTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTACTATAGAAAATACTTTATTT 7558 Query 165780 GAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACT 165839 ||||||||||| ||||| || ||| || ||| | ||||| | || |||||| Sbjct 7559 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACT 7618 Query 165840 TATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 165899 ||||| |||||||| |||| || || ||||| || || ||| | ||||||| |||| Sbjct 7619 TATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAAT 7678 Query 165900 AAGCGTTGGCTTCACTT 165916 || ||||| | || || Sbjct 7679 AAATGTTGGTTACATTT 7695 >seq938 Length=1460269 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 |||||||||||||| || ||||| || ||| | ||| | |||||| || | || || Sbjct 244833 TACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTGCAGGGCTGGT 244892 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 |||| || || || || || ||| | || || || ||||| || ||| | Sbjct 244893 TCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTGGACCAGTCAGATCAGAGC 244952 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || ||||| || || ||| ||| || | || |||||||| ||||||| | Sbjct 244953 TTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGCTTATCCTTCA 245012 Query 161735 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772 ||| |||| ||||||| | || |||||||| || Sbjct 245013 TCTGATGTTGTGCTTGAGACCCACAAGGAAGAGGAGCT 245050 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 |||||||||||||| || ||||| || ||| | ||| | |||||| || | || || Sbjct 250364 TACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTGCAGGGCTGGT 250423 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 |||| || || || || || ||| | || || || ||||| || ||| | Sbjct 250424 TCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTGGACCAGTCAGATCAGAGC 250483 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || ||||| || || ||| ||| || | || |||||||| ||||||| | Sbjct 250484 TTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGCTTATCCTTCA 250543 Query 161735 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772 ||| |||| ||||||| | || |||||||| || Sbjct 250544 TCTGATGTTGTGCTTGAGACCCACAAGGAAGAGGAGCT 250581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583661539360