Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq96 325 5e-84 >seq96 Length=556063 Score = 325 bits (360), Expect = 5e-84 Identities = 528/756 (70%), Gaps = 4/756 (1%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || ||||| ||||| || |||||||| || |||| | Sbjct 6942 TGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCT 7001 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| || || || || ||||| || | Sbjct 7002 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCAT 7061 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| ||||| | | | |||||||| || | ||||| ||| || | || | || | Sbjct 7062 GGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAG 7121 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || || ||| || | | | || ||| | | |||| ||||||||| | | | Sbjct 7122 TTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCAC 7181 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || || || || |||| ||| | || || || |||| |||||| || || || | Sbjct 7182 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATG 7241 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || || | || |||||||| ||| | || || |||||| | ||| ||| | Sbjct 7242 GCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCA-- 7299 Query 170964 ATTA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTT 171022 ||| |||| || ||||||||||| |||||| ||| || | ||| ||||| || || Sbjct 7300 ATTGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATT 7359 Query 171023 CCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGC 171082 ||| || ||||| || || |||| ||||||| || || || ||||| || ||||| Sbjct 7360 CCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGC 7419 Query 171083 AATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCA 171142 || || || ||| | ||||| | ||||| || || || |||||| |||| |||||||| Sbjct 7420 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 7479 Query 171143 TATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTAC 171202 ||||||||| ||||| || | | |||| ||| || | | ||| |||||||||| ||| Sbjct 7480 TATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTAC 7539 Query 171203 AGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACAC 171262 |||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 7540 TATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 7599 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 ||||| | ||||| || ||||| |||||||| ||||||| || ||||| || || || Sbjct 7600 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTT 7659 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTT 171358 | | | || || |||||| ||||||| ||||| Sbjct 7660 TAGGGTTGCTTTTTCCAATAAATGTTGGTTACATTT 7695 Score = 156 bits (172), Expect = 5e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 171354 CATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATT 171413 |||||||||||| | ||||| || || | | | | ||| | ||| ||| || | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 171414 GGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAA 171473 ||||| || || || || | || ||||| ||||| |||||| || | ||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 171474 GATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCA 171533 |||| || || ||||| ||||| ||||| || || || || ||||||||| ||||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 171534 TGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCT 171593 |||||||| | ||| || || ||||||||| || | |||| ||||| |||||||| Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 171594 CGTGGCAATGCACTTTGAT 171612 ||||| || || |||| || Sbjct 9114 CGTGGAAACGCTCTTTAAT 9132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592123279632960