Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 140 5e-28 seq12 116 6e-21 seq3 87.8 3e-12 seq15 86.0 9e-12 >seq5 Length=26133890 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || || ||||| ||| | ||| | || | Sbjct 18099599 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 18099658 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 | ||| || ||| | || | |||||||| || ||||| || |||||||| ||| Sbjct 18099659 GTTACCATAGACAATGTCAAGGCAAGGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 18099718 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||||||||| || | |||||| | | || || | ||||||||| Sbjct 18099719 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAC 18099778 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||||||||| | ||| | || || || ||||| || Sbjct 18099779 ATTCAGAAGGAATCTACTTTGCATCTTGTTCTTCGATTGCGGGGTGGGAT 18099828 Score = 129 bits (142), Expect = 9e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct 18099910 AAGATTCAAGACAAGGAAGGGATCCCACCTGACCAACAAAGGCTTATTTTTGCAGGAAAG 18099969 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | | || || | ||| |||||||| || || ||||| ||||||||| Sbjct 18099970 CAGCTTGAGGATGGCAGGACTTTGGCAGAATATAATATCCAGAAGGAATCTACTTTGCAT 18100029 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| | || ||| | ||||| || Sbjct 18100030 CTTGTTCTTCGATTAAGGGGTGGGAT 18100055 Score = 129 bits (142), Expect = 9e-25 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || || ||| ||| | ||| | || Sbjct 18100054 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTC--ACTCTGGAGGTGGAGAGTTCG 18100111 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||| ||||||||||||||||| || || |||| || Sbjct 18100112 GATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTGCTGACCAG 18100171 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| ||||| || |||||||| || | || | | |||||||| Sbjct 18100172 CAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAAC 18100231 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || |||||| | ||| | ||||| ||||||||||| Sbjct 18100232 ATCCAGAAGGAATCCACCTTGCATCTTGTTCTCCGTTTGCGAGGTGGTAT 18100281 Score = 118 bits (130), Expect = 2e-21 Identities = 191/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || | || || ||||| ||| | ||| | || | Sbjct 18099371 ATGCAAATATTTGTTAAGACGCTGGCCGGAAAGACTATCACTCTTGAGGTGGAGGGTTCG 18099430 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || |||||||| ||||| || || ||||| || || Sbjct 18099431 GATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGAACAG 18099490 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| ||||| || || || ||| || | || || | |||||||| Sbjct 18099491 CAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGCTGATTATAAC 18099550 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||| || ||||| |||||||| | ||| | | || || ||||| || ||| ||| Sbjct 18099551 ATTCAGAAGGAATCTACTTTGCACCTTGTTCTTTGATTGCGGGGTGGGATGCAAATATTT 18099610 Query 124778 ATAAAAA--TTGATTGTAAATAAATATCACT 124806 | || | |||| || ||| | ||||||| Sbjct 18099611 GTCAAGACTTTGACTGGAAA-GACTATCACT 18099640 Score = 86.0 bits (94), Expect = 9e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||||||||||||||||||||| || | |||||| | | || || | ||||||| Sbjct 18103311 CAACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTAT 18103370 Query 124716 AATATTCAAAAAGAATCAACTTTGCAT 124742 || || || || ||||| ||||||||| Sbjct 18103371 AACATCCAGAAGGAATCTACTTTGCAT 18103397 >seq12 Length=1121147 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || ||||| || ||| | ||| |||| ||| Sbjct 24451 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTTGAGAGCTCC 24392 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || || ||||| || || ||||| || || ||||| Sbjct 24391 -GATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 24333 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || || || || ||||| ||||| || | || | | ||||| || Sbjct 24332 GCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAGGACGGTAGGACCCTTGCGGATTACAA 24273 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||||||||| |||||| | ||| | |||||||||| Sbjct 24272 CATCCAAAAGGAGTCAACTTTGCACTTGGTTCTGCGTCTGAGAGGTGGTAT 24222 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| |||| ||| Sbjct 23995 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTC- 23937 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || |||||||| || || || || ||||| || || Sbjct 23936 TGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGGATCCCACCGGACCA 23877 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || ||||| | |||||| |||| || | | ||||||||| Sbjct 23876 GCAGAGGTTGATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTATAA 23817 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || ||| | ||| | || | ||| | || |||||| Sbjct 23816 TATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTGCGTGGTGGT 23768 >seq3 Length=24358521 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||| |||||||| || || || || || ||||| || || || || || Sbjct 747199 AAAATTCAAGATAAGGAAGGTATCCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAG 747258 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | || || | | |||||| || || || || || ||||| | || Sbjct 747259 CAGCTGGAGGATGGCCGTACCCTCGCAGATTACAACATCCAGAAGGAGTCAACCCTCCAC 747318 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || |||||||| Sbjct 747319 TTGGTGCTCCGTCTGCGTGGTGGTAT 747344 >seq15 Length=715379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | || ||||| Sbjct 547536 ATGCAAATCTTTGTCAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 547595 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || || || || || || || || || || || Sbjct 547596 GATACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 547655 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || || || | |||||| | || || | | || ||||| Sbjct 547656 CAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTATAAC 547715 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| |||| ||||| | ||| | || |||||||| Sbjct 547716 ATCCAAAAAGAATCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTAT 547765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755378905715200