Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq15 113 5e-20 seq2 96.9 4e-15 seq960 95.1 1e-14 >seq3 Length=24358521 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || |||| || |||||||| |||||||| Sbjct 746850 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAA 746791 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 746790 GATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 746731 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || ||||| || | |||||||| ||||| || || || || || Sbjct 746730 GTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCAC 746671 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 746670 GAAGATTTGCAT 746659 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| ||||||| ||| || |||| || |||||||| || || || Sbjct 749974 CTCCTTCTGAATATTGTAGTCAGCCAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAA 749915 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 749914 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 749855 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | ||||| || || || || || ||||| Sbjct 749854 GTCAATGGTGTCCGAGCTC---TCGACCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTT 749798 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 749797 CACGAAGATCTGCAT 749783 >seq15 Length=715379 Score = 113 bits (124), Expect = 5e-20 Identities = 154/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || ||||||||||||||||| || || | || || Sbjct 589969 CACCAGATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGGCCATCCTC 590028 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| | ||||||||| | || | || ||| ||||| Sbjct 590029 AAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 590088 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||| || |||| | | | ||||| |||| || || || | |||||||| Sbjct 590089 GATCTTAGCCTTGACATTATCAATTGTGTCGGAGCTC---TCAACCTCCAATGTGATGGT 590145 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || || ||||| ||||||||||||||| Sbjct 590146 CTTTCCGGTGAGAGTCTTGACAAAGATTTGCATT 590179 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || || ||||| || || || ||||| || || || | Sbjct 547751 ACGGAGCACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCC 547692 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||||||||| ||||| | ||||||||| | || | || |||||| Sbjct 547691 ATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTT 547632 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 |||| ||| ||| |||| | | | || || ||| ||| || || | || Sbjct 547631 GTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCCGAGCT---TTCAACTTCCAAGGT 547575 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || || ||||| |||||||||||||| Sbjct 547574 GATTGTCTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 547536 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | | || || ||||||||||| || || Sbjct 548183 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAA 548124 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 548123 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 548065 Query 43111 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | || ||||| ||||| || || |||| Sbjct 548064 TATCAATTGTATC---CGAACTCTCCACCTCCAATGTTATGGTCTTGCCAGTCAGAGTCT 548008 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 548007 TCACAAAGATCTGCAT 547992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 589303 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 589362 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | |||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 589363 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 589421 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 589422 TATCAATGGTATCAGAACTC---TCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCT 589478 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 589479 TCACAAAGATCTGCAT 589494 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||||||||| ||||| ||||| || |||| | || || Sbjct 547973 CACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC 547914 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || | | ||||||||| | || | | |||||||||| Sbjct 547913 GAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 547854 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 |||||| |||| | | | || || ||| |||||| || | || ||||| Sbjct 547853 GATTTTGGCCTTGACATTATCAATAGTATCAGAGCT---TTCCACTTCCAGAGTAATGGT 547797 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || || |||||||| ||||| Sbjct 547796 TTTCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| || || | ||| |||||| || || ||||| || || || || || | || || Sbjct 527491 CACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 527432 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| | ||||||||| | || | || |||||||||| Sbjct 527431 AAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 527372 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 527371 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 527315 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 || || || || ||||| ||||||||||||| Sbjct 527314 CTTCCCGGTAAGGGTCTTGACAAAGATTTGCA 527283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || || ||||| || || || || | || || |||||||| ||||| || Sbjct 589760 TCCTTTTGGATGTTATAATCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAG 589819 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| | |||||| |||| || | || ||||| ||| ||| |||||| ||||| | Sbjct 589820 ATGAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTATCC-TGAATTTTTGCTTTGACATT 589878 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | || || |||| || || || | || || || || || || || ||||| Sbjct 589879 ATCTATGGTATCCGAGCTC---TCAACCTCCAAGGTTATCGTCTTCCCAGTAAGTGTCTT 589935 Query 43169 TACAAAGATTTGCATT 43184 ||||||||||||||| Sbjct 589936 GACAAAGATTTGCATT 589951 >seq2 Length=42086771 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 18566658 TCCTTCTGGATGTTGTAATCTGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 18566599 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||||||| ||| || || | | Sbjct 18566598 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 18566539 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || || | || ||||| || |||||||| || || || Sbjct 18566538 TCAATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 18566479 Query 43173 AAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 18566478 AAGATCTGCATGTTTGCG 18566461 >seq960 Length=1739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 1218 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 1277 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | |||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 1278 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 1336 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 1337 TATCAATGGTATCAGAACTC---TCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCT 1393 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 1394 TCACAAAGATCTGCAT 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571759246013920