Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8 109 8e-19 seq3 104 3e-17 seq5 84.2 3e-11 >seq8 Length=17249391 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || || || || || ||||||||| Sbjct 7852841 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCT 7852782 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||||||||| |||||||| ||| Sbjct 7852781 GCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGA 7852722 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 7852721 GGGATGCCTTCCTTATCCTG 7852702 >seq3 Length=24358521 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || ||||| || | || || || || || ||||||||| Sbjct 8722925 GTTCCTCCCCTCAGCCTCAAAACCAAGTGAAGCGTTGACTCCTTTTGGATGTTATAATCT 8722866 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || ||||| || |||||||||||||||||||| || || ||| Sbjct 8722865 GCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCAGGA 8722806 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 8722805 GGGATGCCTTCCTTATCCTG 8722786 >seq5 Length=26133890 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| || || ||||| || || |||||||| | ||| || || | ||| |||| || Sbjct 18100255 ATGCAAGGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTCCTACCATCCTCTAGCTG 18100196 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| | || ||||| || | ||| ||||||||||||||||| Sbjct 18100195 CTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGCAGGGATTCCTTCTTTATCTTG 18100142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743450523130880