Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 208 7e-49 seq5 109 5e-19 seq12 100 3e-16 seq15 98.7 9e-16 seq3 87.8 2e-12 >seq4 Length=23934096 Score = 208 bits (230), Expect = 7e-49 Identities = 577/875 (66%), Gaps = 15/875 (2%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| ||||| |||| || || || ||| | |||||||| ||||| || || || || Sbjct 23381245 ATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCTTCCTTC 23381186 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||||| ||| || || || || | |||| || || ||||||| | || || Sbjct 23381185 TGGACCGCCGAGGAGGTTGATCTCTGCCAGGACCTACGCCATTGGGAAACTCT--AACCC 23381128 Query 57666 TCTGAGAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTG 57723 | ||||| | || || | |||||| | || || ||||| || || || || || | Sbjct 23381127 CTGGCGAGAAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATCG 23381068 Query 57724 TTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCT 57783 || |||||| | | || ||| || | ||||| || || | ||||| | || Sbjct 23381067 TTTTGGAGAATCTCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGCGCCT 23381008 Query 57784 TTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCG 57843 | ||||| || || | ||||| || ||| | || || || ||||| || || | | Sbjct 23381007 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTGG 23380948 Query 57844 ATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGC 57903 | || ||| | |||||| |||||||| || || || |||||||||| || || | Sbjct 23380947 AGACCTACATCAAGGACTCGGACGAGAAGAACAGGCTTTTTCACGCGATCGATACCATTC 23380888 Query 57904 CC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACG 57962 || ||| || |||||||||| ||||| | | ||||| | || | | | || Sbjct 23380887 CCTGCG-TCACCAAGAAGGCCCAGTGGGCCCTACGCTGGATCGA---CGGCTCAGAATCG 23380832 Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 || || ||| || | | || || || ||| ||||| |||||||| ||||| || ||| Sbjct 23380831 TTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTT 23380772 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || ||||||||| | ||||| ||||| | ||||| || |||||||| |||||| Sbjct 23380771 TGCGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGCCGGGACTGACGTTCTCAAACGAG 23380712 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 ||||| ||| | || |||||| | || || || |||||| | ||||||| | | Sbjct 23380711 TTGATCTCGAGAGATGAGGGTTTGCACTGCGACTTCGCGTGCTTGCTGTACTCGCTGCTG 23380652 Query 58143 GTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGA 58201 || || | || ||| |||||| | | || || | ||||| | ||| || Sbjct 23380651 AGGAAGAAGCTGA-GCGAGGATCGAGTGAAGTCGATCATACGAAATGCGGTGGAGATAGA 23380593 Query 58202 AAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGAT 58261 | ||||| || |||||| ||||| || || | || |||||| ||| |||| Sbjct 23380592 GAGAGAGTTCGTGTGCGAAGCGTTACCGTGCGCTCTGGTGGGAATGAACGGCGATCTGAT 23380533 Query 58262 GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGT 58319 | ||||||| ||||| || || || || || || || || | | | || | Sbjct 23380532 GAGCCAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGGTGAGCTTGGGTACGGGAAGAT 23380473 Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 |||||| | | || ||||| |||| ||| | |||||| || |||| ||||| Sbjct 23380472 --TTACAATGTGCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACC 23380415 Query 58380 AACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || |||||||| || | ||| | || || || || Sbjct 23380414 AATTTTTTCGAGAAGAGGGTTGGGGAGTACCAGAA 23380380 >seq5 Length=26133890 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || ||||| || ||||| | || || || || Sbjct 18099142 CATGCAGATATTTGTGAAAACCCTTACTGGCAAGACTGTCACCCTTGAGGTGGAGAGCTC 18099201 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | | || | ||||| || ||| || ||| ||||| || | ||||| |||| Sbjct 18099202 GGACACTATTGATATTGTCAAGACTAAGA-TACAGGATAAGGAGGGGATTCCGCCTGACC 18099260 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || ||||| ||||| || ||||||||||| || |||| || |||||| | Sbjct 18099261 AGCAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGACGATTACA 18099320 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || | || || ||||| ||| | || || || ||| || | ||||| || Sbjct 18099321 ACTTCCAGAAGGAATCTACTTTGCACCTTGTTCTTCGATTAAGGGGTGG 18099369 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||| | || || || ||||| | || || || || Sbjct 18099371 ATGCAAATATTTGTTAAGACGCTGGCCGGAAAGACTATCACTCTTGAGGTGGAGGGTTCG 18099430 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | | |||| || || | || || || || Sbjct 18099431 GATACCATAGACAATGTCAAGGCAAAGATTCAAG-ACAAAGAGGGAATTCCACCAGAACA 18099489 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| ||||| || ||||||||||| || |||| || |||||||| Sbjct 18099490 GCAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGCTGATTATAA 18099549 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || ||||| ||| | || || || ||| || || |||| || Sbjct 18099550 CATTCAGAAGGAATCTACTTTGCACCTTGTTCTTTGATTGCGGGGTGG 18099597 >seq12 Length=1121147 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || ||||| || || || || | || || || || Sbjct 24223 ATGCAGATTTTCGTGAAGACCCTCACAGGGAAGACAATAACTTTGGAGGTCGAGAGCTCT 24164 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || ||||||||||||| | || || || ||| Sbjct 24163 GATACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCAG 24104 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || || ||||| || | |||| || ||||| ||| Sbjct 24103 CAGAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTGGCGGATTACAAC 24044 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| ||||||||||||||||| || || || Sbjct 24043 ATCCAGAAAGAGTCGACTCTTCATCTGGTGCTCAGGCT 24006 >seq15 Length=715379 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || |||||||| || |||||| |||| |||||| || Sbjct 547080 ATGCAGATTTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 547139 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||||| | || || |||||| Sbjct 547140 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 547199 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| | || || || | |||||| ||| Sbjct 547200 CAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAAC 547259 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || |||| ||| | || | || |||| Sbjct 547260 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGTA 547308 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || || || |||||| | || |||||| || Sbjct 547535 CATGCAAATCTTTGTCAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTC 547594 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | || | ||||| || ||| | ||||||||| ||| | || || |||| Sbjct 547595 GGATACCATTGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGACC 547653 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||| | || || |||||||| || ||| | || || | | | || | || ||| Sbjct 547654 AGCAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGA-TGGACGCACCCTTGCTGACTAT 547712 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||||||||||||||| || |||| || | ||| | || |||| Sbjct 547713 AACATCCAAAAAGAATCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTA 547764 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || ||||| ||| | || ||||| || Sbjct 589950 ATGCAAATCTTTGTCAAGACACTTACTGGGAAGACGATAACCTTGGAGGTTGAGAGCTCG 589891 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | |||||| | ||| ||| ||||||||| | || ||||| ||| Sbjct 589890 GATACCATAGATAATGTCAAAGCAAAAATTCAGGATAAGGAAGGCATTCCCCCCGATCAG 589831 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| | || || || | |||||||||| Sbjct 589830 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCCGATTATAAC 589771 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||||| || ||||| ||| | || | || |||| Sbjct 589770 ATCCAAAAGGAATCAACTCTGCACCTGGTGCTTCGGTTGCGTGGTGGTA 589722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || |||||||| || |||||| |||| |||||| || Sbjct 527054 ATGCAGATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 527113 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||||| | || || |||||| Sbjct 527114 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 527173 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || |||||||| ||| | || || Sbjct 527174 CAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGA 527208 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || |||||| | || |||||| || Sbjct 547308 ATGCAAATTTTTGTCAAGACCCTTACCGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 547367 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || || || ||||||||| ||| | || || ||||| Sbjct 547368 GATACCATTGACAATGTCAAGGCAAAG-ATCCAGGACAAGGAGGGCATTCCCCCAGACCA 547426 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| || ||| | || || | || | ||| || || Sbjct 547427 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACCCTTGCCGACTACAA 547486 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || || || || ||||| |||| ||| |||| Sbjct 547487 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGACT 547525 >seq3 Length=24358521 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || ||||| || |||||| | || || || | || Sbjct 746659 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGTCATCT 746718 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 746719 GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 746778 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || |||||||| || ||| | || ||| Sbjct 746779 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGAC 746814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445720909538880