Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 163 4e-35 seq1 113 6e-20 seq6 91.5 2e-13 >seq4 Length=23934096 Score = 163 bits (180), Expect = 4e-35 Identities = 392/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||||| |||||| ||||| || || ||||| || | Sbjct 23380663 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGA 23380722 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 |||| ||||| ||||||| || ||||| || ||||||||||| | || || | || Sbjct 23380723 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 23380781 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751 || ||||| || ||||| || ||||||||| | | || | |||| || || || Sbjct 23380782 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 23380839 Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 23380840 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGA 23380899 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || | ||| || ||| || || | || || | || || || | | || | Sbjct 23380900 TCGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGC 23380959 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || ||||| ||||| || |||||||| | ||||| Sbjct 23380960 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCT 23381019 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | ||| ||||| | || | | | || | ||| || || || || ||| Sbjct 23381020 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCAG 23381079 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || || || || | || || | || || | || ||| | || ||||| | | Sbjct 23381080 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTT 23381139 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||||| | || | | | ||| || || || | ||||| || || ||||| | Sbjct 23381140 CCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCGG 23381199 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 23381200 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 23381246 >seq1 Length=26753024 Score = 113 bits (124), Expect = 6e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||| Sbjct 12870853 CCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGG 12870912 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 || ||| || || || | ||||| || || ||||||| || |||||||||| || Sbjct 12870913 AACAATGCCATTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 12870972 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || || | ||| ||||| || ||| ||| ||| | || ||| || || || Sbjct 12870973 GTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGT 12871032 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| |||||||| ||||||||||| ||||| || || || |||||| Sbjct 12871033 ATCATAAATGCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 >seq6 Length=21292200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||| || | ||| |||| ||| || | ||||| | || | | || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | | ||| || || || || | ||| || || || || | || | ||| | Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 18348249 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||||||| || ||||| ||||| || | |||| || || | |||||| | || | Sbjct 18348250 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 18348309 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 18348310 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629753327113920