Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq15 89.7 5e-13 seq12 82.4 8e-11 >seq3 Length=24358521 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || ||||| |||| ||||| ||||| || ||||| ||||| || || Sbjct 746814 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTT 746755 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| | | ||||||||||| ||| | Sbjct 746754 GTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGAT 746695 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 746694 GGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 746659 >seq15 Length=715379 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| |||||||||||| | |||| || || ||||| || ||| Sbjct 589754 GTTGATTCCTTTTGGATGTTATAATCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 589813 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| || | ||||||||||| || |||||||| || || ||| |||||| ||| Sbjct 589814 GCAAAGATGAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTATC-CTGAATTTTTGCTTT 589872 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | | ||| ||||| | ||| | |||||| || || | || Sbjct 589873 GACATTATCTATGGTATCCGAGCTCTCAACCTCCAAGGTTATCGTCTTCCCAGTAAGTGT 589932 Query 139747 TTTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 589933 CTTGACAAAGATTTGCAT 589950 >seq12 Length=1121147 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| ||| ||||||| || || || || || ||||| || |||| | ||||| Sbjct 24918 AATCGCAGAACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGCCTAGGGTGCTG 24977 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || | || || || || |||| || | ||||||||||| || || || || Sbjct 24978 CCGTCCTCCAATTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGGGGAATTCCCTCC 25037 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | |||||| | | ||||||||| | || Sbjct 25038 TTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAGAGCTCTCCACCTCGAGAGTG 25097 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| | ||||| ||||| | ||||| Sbjct 25098 ATTGTCTTGCCGGTTAGGGTTTTGACGAAGACCTGCAT 25135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496013376668800