Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=24358521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | ||||| || | Sbjct 748025 CCACCACGGAGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 747966 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | || || || | || Sbjct 747965 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 747906 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 747905 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 747847 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 747846 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 747799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | ||||| || | Sbjct 748253 CCACCACGGAGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 748194 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | || || || | || Sbjct 748193 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 748134 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 748133 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 748075 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 748074 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 748027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | ||||| || | Sbjct 748481 CCACCACGGAGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 748422 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | || || || | || Sbjct 748421 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 748362 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 748361 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 748303 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 748302 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 748255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | ||||| || | Sbjct 748709 CCACCACGGAGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 748650 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | || || || | || Sbjct 748649 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 748590 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 748589 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 748531 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 748530 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 748483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | ||||| || | Sbjct 748937 CCACCACGGAGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 748878 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | || || || | || Sbjct 748877 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 748818 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 748817 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 748759 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 748758 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 748711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | ||||| || | Sbjct 749165 CCACCACGGAGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 749106 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | || || || | || Sbjct 749105 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 749046 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 749045 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 748987 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 748986 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 748939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381331654201512