Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 163 4e-35 seq1 125 1e-23 seq6 100 4e-16 >seq4 Length=23934096 Score = 163 bits (180), Expect = 4e-35 Identities = 392/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||| |||||||||| |||||||||||| || || ||||| || | Sbjct 23380663 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGA 23380722 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 |||| ||||| ||||||| || ||||| || ||||||||||| | |||||| | || Sbjct 23380723 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 23380781 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 || ||||| || ||||| || |||||||| | | || | |||| || || || Sbjct 23380782 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 23380839 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 23380840 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGA 23380899 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | || | ||| || ||| || || | || || | || || || | | || | Sbjct 23380900 TCGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGC 23380959 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || ||||| ||||| || |||||||| | |||| Sbjct 23380960 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCT 23381019 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| ||||| ||||| | || | | | || | ||| || || || |||||| Sbjct 23381020 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCAG 23381079 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 ||| || || || || | || || | || || | || ||| | || |||| | | Sbjct 23381080 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTT 23381139 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||||| | || | | | ||| || || || | ||||| || || || || | Sbjct 23381140 CCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCGG 23381199 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 |||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 23381200 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 23381246 >seq1 Length=26753024 Score = 125 bits (138), Expect = 1e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||| Sbjct 12870853 CCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGG 12870912 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 || ||| |||||||| | ||||| || || |||||||| || |||||||||| || Sbjct 12870913 AACAATGCCATTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 12870972 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 | || || | ||| ||||| || ||| ||| ||| | || ||| || || || Sbjct 12870973 GTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGT 12871032 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 |||||| ||||| || || |||||||| ||||| || || || |||||| Sbjct 12871033 ATCATAAATGCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 >seq6 Length=21292200 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||| || | ||| |||| ||| || | ||||| | |||| | || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | | ||| || || || || | ||| ||||| || || | || | ||| | Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 18348249 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| ||||| || ||||| || ||||| | ||||| || || | |||||| | || | Sbjct 18348250 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 18348309 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 18348310 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 71953 TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 ||||||||| || |||| |||||| ||||| ||||| | ||| ||||| | ||| Sbjct 18347231 TCTCCCCAAAGATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTGCCCA 18347290 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 |||| | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 18347291 TCATTTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTC 18347348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671070710244640