Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-33 >seq4 Length=23934096 Score = 158 bits (174), Expect = 2e-33 Identities = 571/871 (66%), Gaps = 47/871 (5%) Strand=Plus/Minus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||||| |||||||| ||||| |||| ||||| ||||| | ||| ||||| ||| Sbjct 23381224 GAAATCTGGGAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGGTTGAT 23381165 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TT 125131 || | | ||||||| | ||||||| |||| | || ||| |||||| || Sbjct 23381164 CTCTGCCAGGACCTACGCCATTGGGAAACTC---TAACCC---CTG-GCGAGAAGCACTT 23381112 Query 125132 TATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTT 125191 || | ||| | | |||||||| || | ||| || || ||||| || ||||| Sbjct 23381111 CATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTTTTGGAGAATCTCGC 23381052 Query 125192 GACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCA 125248 | | ||| | ||| | | ||| || | |||| ||| || || ||||| ||||| Sbjct 23381051 CGGAAGGTTCA-TGAAG-GAAGTCCAGGTCTCCGAGGC-TCGCGCCTTCTACGGCTTCCA 23380995 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 ||| || |||||| | ||||| || |||||| || | || | ||||| Sbjct 23380994 GATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTGGAGACCTACATCAA 23380935 Query 125309 CGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAA 125368 || || | || ||| ||| ||| |||| ||||| || | || | | || Sbjct 23380934 GGACTCGGACGAGAAGAACAGGCTTTTTCACGCGATCGATACCATTCCCTGCGTCACCAA 23380875 Query 125369 AAAGGCTCAATGGGTGATTCGGTGGATCGATGACG-ACAAGTCTTCGTACGCCGACAGAC 125427 ||||| || |||| | || |||||||| | | | || |||| || || | Sbjct 23380874 GAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTCAGAA----TCGTTTGCGGAGCGGA 23380819 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | ||||| || || ||| || || || ||||| ||||| |||||| || || |||| Sbjct 23380818 TCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTT 23380759 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| ||||||||||| | ||||| ||||||||| | |||||||| || || ||| Sbjct 23380758 GGCTAAAGAAGCGCGGGTTAATGCCGGGACTGACGTTCTCAAACGAGTTGATCTCGAGAG 23380699 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 | ||||| | ||||| ||||| || | |||| ||| ||| | ||| Sbjct 23380698 ATGAGGGTTTGCACTGCGACTTCGCGTGCTTGCTGT------ACTCGCTG----CTGAG- 23380650 Query 125608 GCAGATCC--AGCGATGAAAAGGTCA--TC-AACATTGTAACCGATGCCGTGAGGATAGA 125662 | ||| | ||||| || || | || | ||| || |||| ||| |||||| Sbjct 23380649 GAAGAAGCTGAGCGAGGATCGAGTGAAGTCGATCATACGAA---ATGCGGTGGAGATAGA 23380593 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722 |||||| | |||| | ||||| | || | || |||||| || | || || Sbjct 23380592 GAGAGAGTTCGTGTGCGAAGCGTTACCGTGCGCTCTGGTGGGAATGAACGGCGATCTGAT 23380533 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG-TTGATTGGCCGCAAGA 125781 | || ||||||| ||||| ||||| ||| | || ||| ||| ||| | | | |||| Sbjct 23380532 GAGCCAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGGTGAGCTTGGGT-ACGGGAAGA 23380474 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA--CTAGAGGGTAAGAC 125839 ||||||| | |||| || || |||| ||| ||| |||| || |||| ||||| Sbjct 23380473 TTTACAATGTGCAGAACCCGTTCGATTGGATG--GAGCTGATCAGCCTGCAGGGGAAGAC 23380416 Query 125840 CAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| ||||||||||||| ||| | |||||| Sbjct 23380415 CAATTTTTTCGAGAAGAGGGTTGGGGAGTAC 23380385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740983574908640