Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq960 91.5 1e-13 seq15 91.5 1e-13 seq12 89.7 4e-13 seq8 82.4 6e-11 >seq960 Length=1739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||||||||| ||||| || || | || | | ||||| Sbjct 1428 CACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTCCTTCCATCCTC 1487 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| |||| | |||||||| || || | ||||| ||||| Sbjct 1488 CAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 1547 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| || || | | | | |||||| ||| ||| | ||||| || || Sbjct 1548 GATTTTGGCCTTCACATTGTCAATAGTATCTGAGCTTTCCACTTCCAAAGTAATTGTCTT 1607 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| |||||||| Sbjct 1608 CCCAGTCAAAGTTTTCACAAAGATTTGCAT 1637 >seq15 Length=715379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||||||||| ||||| || || | || | | ||||| Sbjct 589513 CACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTCCTTCCATCCTC 589572 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| |||| | |||||||| || || | ||||| ||||| Sbjct 589573 CAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 589632 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| || || | | | | |||||| ||| ||| | ||||| || || Sbjct 589633 GATTTTGGCCTTCACATTGTCAATAGTATCTGAGCTTTCCACTTCCAAAGTAATTGTCTT 589692 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| |||||||| Sbjct 589693 CCCAGTCAAAGTTTTCACAAAGATTTGCAT 589722 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||||| | ||||| ||||| || || |||||||| || || ||||| || Sbjct 589724 CCACCACGCAACCGAAGCACCAGGTGCAGAGTTGATTCCTTTTGGATGTTATAATCGGCA 589783 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || ||| | || || ||||||||||| ||| Sbjct 589784 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCGGGGGGA 589843 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | ||| || || || |||||| ||| || | | | ||||| | || ||| Sbjct 589844 ATGCCTTCCTTATCCTGAATTTTTGCTTTGACATTATCTATGGTATC-CGAGCTCTCAAC 589902 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| || || || || || | || |||||||| ||||||||| Sbjct 589903 CTCCAAGGTTATCGTCTTCCCAGTAAGTGTCTTGACAAAGATTTGCATT 589951 >seq12 Length=1121147 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||||||||| || ||||||||||| | || | |||||||| Sbjct 24243 ACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTACCGTCCTCC 24302 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| || | ||||| ||||||||||| ||| | ||||| ||||| Sbjct 24303 AATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGG 24362 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | |||||| ||| || | ||||| ||||| Sbjct 24363 ATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCAACCTCCAGAGTAATTGTTTTC 24422 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||||| || || ||||| Sbjct 24423 CCGGTTAGGGTTTTGACGAAGATCTGCAT 24451 >seq8 Length=17249391 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| || |||| ||| | ||| |||||||| || || || ||||| | Sbjct 7852840 TTCCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTG 7852781 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | | ||||||| || ||||| ||| |||| | |||||||||||| Sbjct 7852780 CAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGATC 7852726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414531550524616