Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 4e-12 seq12 86.0 4e-12 >seq15 Length=715379 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGT 43970 |||||| || || ||| ||| |||||||| || || || || | | || ||| | Sbjct 547973 CACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC-AAGGGTCCTTCCATCCT 547915 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || ||||||||||| ||||||| |||||||| | || | ||| || || || Sbjct 547914 CGAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 547855 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||||| ||||| || ||| |||||| | ||||| || | ||||| |||| Sbjct 547854 GGATTTTGGCCTTGACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATGGTTT 547795 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| | ||| |||||||| || ||||| Sbjct 547794 TCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 >seq12 Length=1121147 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATT 43976 ||| || ||| |||||| || ||||||||||| | || | ||| |||| || | | Sbjct 23792 ATGGAGAGTGGACTCTTTCTGGATATTATAATC-TGCAAGGGTACGACCATCCTCAAGCT 23850 Query 43977 GTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTT 44036 |||| || ||||| ||||||| ||||||||| | || | || || || ||| ||| | Sbjct 23851 GTTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGAATCT 23910 Query 44037 TTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGG 44096 | |||||| | ||| ||| || | ||| || || | ||||| || || || | Sbjct 23911 TAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGAGTAATGGTCTTCCCAG 23970 Query 44097 TTAAAGTCTTCACAAATATTTGCATG 44122 | | ||||||||||| || |||||| Sbjct 23971 TCAGGGTCTTCACAAAAATCTGCATG 23996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354742300072272