Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 8e-16 seq960 93.3 4e-14 >seq15 Length=715379 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCT 48575 ||| || ||||| ||| |||||||||||||||||| ||||| || ||| || |||| Sbjct 547973 CACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC-AAGGGTCCTTCCATCCT 547915 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || || | |||||| || || | || ||||||||| Sbjct 547914 CGAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 547855 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||||| | | || ||||| | ||| || | || ||||||| Sbjct 547854 GGATTTTGGCCTTGACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATGGTTT 547795 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| |||||||||||||| |||||||| Sbjct 547794 TCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||| || || ||| | | ||||| ||||| Sbjct 548194 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGC-AAGAGTCCTCCCATCCTCAAGCTG 548136 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || | | |||||| || || | | ||||||||| ||| || Sbjct 548135 CTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTT 548076 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || ||||| | | |||| ||| | ||||||||| || || || Sbjct 548075 GGCCTTCACATTATCAATTGTATCCGAACTCTCCACCTCCAATGTTATGGTCTTGCCAGT 548016 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||||| |||||||| ||||||||| Sbjct 548015 CAGAGTCTTCACAAAGATCTGCATC 547991 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||| | ||| || | | ||||||||||||| Sbjct 589292 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTG-CAAGAGTCCTCCCGTCCTCCAGCTG 589350 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || | | ||||| ||| || | | ||||||||| ||| || Sbjct 589351 CTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 589410 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | |||||||| | | |||| ||| | ||||| || || || || Sbjct 589411 AGCTTTCACATTATCAATGGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGT 589470 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 589471 GAGGGTCTTCACAAAGATCTGCATC 589495 >seq960 Length=1739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||| | ||| || | | ||||||||||||| Sbjct 1207 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTG-CAAGAGTCCTCCCGTCCTCCAGCTG 1265 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || | | ||||| ||| || | | ||||||||| ||| || Sbjct 1266 CTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 1325 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | |||||||| | | |||| ||| | ||||| || || || || Sbjct 1326 AGCTTTCACATTATCAATGGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGT 1385 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 1386 GAGGGTCTTCACAAAGATCTGCATC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421209286032164