Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 104 1e-17 seq3 96.9 2e-15 seq1 96.9 2e-15 >seq7 Length=17044513 Score = 104 bits (114), Expect = 1e-17 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 14898514 AATAAAAAAATAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 14898571 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| || |||| |||||||||| ||||| Sbjct 14898572 GACGCCCTAACCAGCTGAGCTAATAGGCCG 14898601 Score = 104 bits (114), Expect = 1e-17 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 15593101 AATAAAAAAATAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 15593158 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| || |||| |||||||||| ||||| Sbjct 15593159 GACGCCCTAACCAGCTGAGCTAATAGGCCG 15593188 >seq3 Length=24358521 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||||||||||||||||||| || |||| | Sbjct 75729 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCCCTAACCAGC 75670 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 75669 TGAGCTAATAGGCCG 75655 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| |||||||||||||||||||||| |||||| || Sbjct 20766196 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGCCGCTCTAAC 20766137 Query 11512 CAACT 11516 || || Sbjct 20766136 CAGCT 20766132 >seq1 Length=26753024 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||||||||||||||||||| || |||| | Sbjct 4643916 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCCCTAACCAGC 4643857 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 4643856 TGAGCTAATAGGCCG 4643842 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261465181952464