Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-28 seq5 122 1e-23 seq354 109 9e-20 >seq1 Length=26753024 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || ||||||||||| || || |||||||||||||| | ||||| | Sbjct 5119663 GAGATAACATCCAGGGCATCACCAAGCCTGCGATTCGTCGTCTGGCTCGCAGAGGTGGTG 5119604 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| | | || | |||||||| ||| Sbjct 5119603 TGAAGCGTATCAGTGGTCTGATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTTCTCG 5119544 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | || || |||||||| | | |||||||| ||| Sbjct 5119543 AGAATGTGATTCGTGATGCAGTGACTTACACTGAGCACGCCAGGAGGAAGACTGTGACCG 5119484 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| ||||| | || || | | | ||||||||||| ||| Sbjct 5119483 CCATGGATGTGGTGTATGCTTTGAAGAGGCAGGGAAGGACCCTCTATGGTTTTGGGGGTT 5119424 Query 16698 A 16698 | Sbjct 5119423 A 5119423 Score = 131 bits (144), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| || ||||||||||| |||||| | || || || Sbjct 21220184 GATAACATTCAGGGCATCACAAAGCCTGCAATCCGTCGTCTTGCTCGTAGGGGCGGCGTG 21220243 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | ||||||| |||| |||| || | |||||||||||| || Sbjct 21220244 AAGCGTATCAGTGGCCTCATCTATGAGGAGACACGTGGCGTCCTCAAGATCTTCCTCGAG 21220303 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || ||| | ||| || |||||||| | ||||| || ||| || Sbjct 21220304 AATGTGATCCGAGACGCTGTGACCTACACAGAGCACGCCCGGAGGAAGACGGTGACCGCC 21220363 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 21220364 ATGGATGTCGTCTATGC 21220380 >seq5 Length=26133890 Score = 122 bits (134), Expect = 1e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||| | | || ||||| ||||||||||| || ||||||||||| || || Sbjct 20111338 GCCAAACGGCATCGTAAGGTC-CTTCGCGATAACATCCAGGGCATCACCAAGCCGGCCAT 20111396 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| | || || || |||||| || || || |||| || |||| Sbjct 20111397 TCGTCGTTTGGCTCGCAGAGGAGGTGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGAC 20111456 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||| ||| ||| ||| ||| || ||| | ||| ||||| Sbjct 20111457 ACGTGGCGTGCTCAAGATCTTTCTCGAGAACGTGATCAGAGACGCTGTGACCTACACCGA 20111516 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCA 16657 ||||||| || ||||| || || | ||||| | ||||| ||| Sbjct 20111517 GCACGCTCGCCGCAAGACGGTGACGGCAATGGACGTGGTCTACGCA 20111562 Score = 120 bits (132), Expect = 5e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || || |||||| ||||||| | || Sbjct 20113710 CTTCGTGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTTTGGCTCGCAGAGGA 20113769 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || || |||| || |||| |||| || | ||||||||| Sbjct 20113770 GGTGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTC 20113829 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| ||| || || | ||| || ||||||||| || ||||| || Sbjct 20113830 CTCGAGAACGTGATCAGAGACGCCGTGACCTACACGGAGCACGCTCGCCGCAAGACGGTG 20113889 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||||| | ||||| || |||| Sbjct 20113890 ACGGCCATGGACGTGGTCTACGCCCTGAA 20113918 Score = 89.7 bits (98), Expect = 8e-14 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| |||| |||||||| || ||||||||||| || || || | || || | || || Sbjct 20475472 CTTAGAGACAACATCCAGGGCATCACCAAGCCTGCGATTCGAAGGCTTGCCAGACGAGGA 20475413 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | |||| ||||||| | | |||| | ||||||||| Sbjct 20475412 GGCGTGAAGAGAATCAGCGGCCTCATCTACGAAGAGACCAGAGGTGTTCTCAAGATCTTC 20475353 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || | || |||||||||||| | ||||| || Sbjct 20475352 TTGGAGAACGTGATTCGCGACGCCGTGACTTACACCGAGCACGCTCGGAGGAAGACGGTG 20475293 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| ||||||| || | || | || ||| | | | || || || || Sbjct 20475292 ACCGCCATGGATGTCGTCTACGCGCTCAAGAGGCAGGGCAGGACCTTGTACGGATTCGGG 20475233 Query 16694 AGTTAATCTTCTAA 16707 |||||| || ||| Sbjct 20475232 GGTTAATTTTGTAA 20475219 >seq354 Length=14923 Score = 109 bits (120), Expect = 9e-20 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || || | || |||||| | || ||||| Sbjct 6444 GATAACATCCAAGGCATCACCAAGCCCGCCATTCGAAGACTTGCTCGTAGAGGCGGAGTG 6385 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| ||||| | | | ||| | ||||||||| | || Sbjct 6384 AAGCGCATCAGCGGTCTCATCTACGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 6325 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||| | | ||||| || || || Sbjct 6324 AATGTGATTCGCGATGCTGTAACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 6265 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || || | | |||||||||||| ||||| Sbjct 6264 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGACGAACCCTCTATGGTTTTGGAGGTTAA 6205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067735597652