Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq8164 589 6e-164 seq5 226 8e-55 seq7 165 2e-36 >seq8164 Length=157712 Score = 589 bits (652), Expect = 6e-164 Identities = 730/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1362 TTTTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1303 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| | || || || || ||||| Sbjct 1302 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 1243 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || ||| | || ||||||||| Sbjct 1242 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACAAT 1183 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | ||| || ||||| |||||||||| ||||| Sbjct 1182 ATTATTTCTGGTGCCATTATTCCTACCTCTGCAGCTATAGGTTTGCACTTTTACCCGATA 1123 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| |||||||||||||| ||||| ||| |||| |||| Sbjct 1122 TGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTT 1063 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1062 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1003 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| ||| |||| Sbjct 1002 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 943 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || ||| |||| ||||| || ||| ||| |||||||| || || || Sbjct 942 GT-TTTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAAT 884 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||| |||||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| || Sbjct 883 CTCCGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 824 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 823 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 764 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| || || | |||| |||||| || || ||| ||| || | || Sbjct 763 GTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 704 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || |||||||| || || || || || || ||||| Sbjct 703 TTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGG 644 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| || || Sbjct 643 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 584 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| ||||| | | || ||| |||||||||||||||| Sbjct 583 TGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAA 524 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 | | ||||||||||| || || || || ||||||||| ||| | || |||| | Sbjct 523 CTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTC-AGGGTCGTGTAATTAATA 465 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 464 CTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 405 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||||| ||||| || ||| ||||| | | ||| Sbjct 404 CTCATAATTTCCCTCTAGATCTAGCTGCTGTTGA 371 >seq5 Length=26133890 Score = 226 bits (250), Expect = 8e-55 Identities = 248/327 (76%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 ||||| ||||| ||||| || |||||||| || || || || || || ||||| ||||| Sbjct 9071223 TTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTG 9071282 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || || ||||||||| |||| | |||||||||||||||||||| || || ||| ||| Sbjct 9071283 ATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTAGCTGCTTGG 9071342 Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 || || || || || ||| ||||| | | || ||| ||||||||||||||||| | ||| Sbjct 9071343 CCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAAT 9071402 Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGC 20194 |||||||| || || || || ||||||||| ||| | || |||| | ||||| Sbjct 9071403 GGTTTTAATTTCAATCAATCTGTAGTTGATAGTC-AGGGTCGTGTAATTAATAATTGGGC 9071461 Query 20195 TGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAA 20254 |||| | | || | |||||||| || | ||||||||||| || || ||||||||||| Sbjct 9071462 TGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAA 9071521 Query 20255 CTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||| || ||| ||||| | | ||| Sbjct 9071522 TTTCCCTCTAGATCTAGCTGCTGTTGA 9071548 >seq7 Length=17044513 Score = 165 bits (182), Expect = 2e-36 Identities = 354/542 (65%), Gaps = 43/542 (8%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || || || |||| ||||| | || |||||||| || | Sbjct 8091342 TTTTGTAACTGGATAACTAGCACTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 8091283 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| | ||||| | || || || | ||||| Sbjct 8091282 ATGATCCCTACTTTATTGACCGCAACTTATGTATTTATTATTGCTTTCATTGTTGCACCT 8091223 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| | ||||| || || ||| | || |||||||| Sbjct 8091222 CCAGTAGATATTGATGGTATTCGTGAACATGTTTCTGGATCTTTACTTTATAGAAACAAT 8091163 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | ||| | || ||||| ||||| Sbjct 8091162 ATTATTTCTGGTGCCATTATTCCTACCTCTATAGCTATAGGTTTGCAC------------ 8091115 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||| || ||||| ||| |||| |||| Sbjct 8091114 -------------------------------ACAATGGTGGTCCTTATGAACTAATTGTT 8091086 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | || |||||| | || |||| ||| ||| | |||||||||| || | | Sbjct 8091085 CTACAGTTCTTACTTGGTATAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 8091026 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| | | |||| ||| |||| Sbjct 8091025 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACTGCT 8090966 Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 || ||| | | || ||| |||| ||||| || ||| |||||||||||| || || ||| Sbjct 8090965 GTTTTTTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCCCTAGGAATC 8090906 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 || |||| ||| ||||| ||| | ||||||||||| || ||||| ||||||||||| || Sbjct 8090905 TCCGGTATTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 8090846 Query 19830 TT 19831 || Sbjct 8090845 TT 8090844 Score = 120 bits (132), Expect = 9e-23 Identities = 118/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 19677 GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCA 19735 |||||| |||| || | |||| ||| |||||| ||||| | | || ||| |||| || Sbjct 8087221 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATATATCCAATTGGTCA 8087163 Query 19736 AGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 19795 ||| || ||| |||||||||||| || || ||||| |||| ||| ||||| ||| | || Sbjct 8087162 AGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGT 8087103 Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCA 19825 ||||||||| || ||||| ||||||||||| Sbjct 8087102 ATTCCAAGCTGAGCACAACATCCTTATGCA 8087073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144427596747984