Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 161 1e-34 seq1 107 2e-18 seq6 91.5 2e-13 >seq4 Length=23934096 Score = 161 bits (178), Expect = 1e-34 Identities = 394/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || ||||| |||||||||| |||||| ||||| || | ||||| || | Sbjct 23380663 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGA 23380722 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCA 33414 |||| ||||| ||||||| || ||||| || ||||||||||| | || || | || Sbjct 23380723 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 23380781 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33473 || ||||| || ||||| || ||||||||| | | || | |||| || || || Sbjct 23380782 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 23380839 Query 33474 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 23380840 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGA 23380899 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | || | ||| || ||| || || | || || | || || || | | || | Sbjct 23380900 TCGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGC 23380959 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 | ||||| || || || ||||| || ||||| ||||| || |||||||| | ||||| Sbjct 23380960 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCT 23381019 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCA 33711 ||| | ||| ||||| | || | | |||| || | ||| || || || |||||| Sbjct 23381020 CGGAGACCTGGACTTC-CTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCA 23381078 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 ||| || || || || | || || | || || | || ||| | || ||||| | Sbjct 23381079 GAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTT 23381138 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||||| | || | | | ||| || || || | ||||| || || ||||| Sbjct 23381139 TCCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCG 23381198 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 ||||| || ||||| | |||||| || |||||||| ||||| ||| Sbjct 23381199 GCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 23381246 >seq1 Length=26753024 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||| Sbjct 12870853 CCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGG 12870912 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 || ||| || || || | ||||| || || |||||||| || |||||||||| || Sbjct 12870913 AACAATGCCATTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 12870972 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || || | ||| ||||| || ||| ||| ||| | || ||| || || || Sbjct 12870973 GTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGT 12871032 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| || || || ||||||||||| ||||| || || || |||||| Sbjct 12871033 ATCATAAATGCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 >seq6 Length=21292200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||| || | ||| |||| ||| || | ||||| | || | | || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | | ||| || || || || | ||| || || || || | || | ||| | Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 18348249 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||| || ||||| || ||||| | |||| || || | |||||| | || | Sbjct 18348250 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 18348309 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 18348310 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 |||||||||| || | || |||||| |||| ||||| | ||| ||||| | || Sbjct 18347231 TCTCCCCAAAGATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTGCCCA 18347290 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266 |||| | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 18347291 TCATTTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTCGA 18347350 Query 63267 GTTCTATGTTCCTC 63280 | | |||||| || Sbjct 18347351 GCCCGATGTTCTTC 18347364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622883628238240