Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq15 100 2e-16 seq10 84.2 2e-11 seq5 84.2 2e-11 >seq15 Length=715379 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || ||| | ||||| || |||| ||| | || || ||| | Sbjct 589951 AATGCAAATCTTTGTCAAGACACTTACTGGGAAGACGATAACCTTGGAGGTTGAGAGCTC 589892 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | |||||| ||| ||| || || |||||||| || |||||||| Sbjct 589891 GGATACCATAGATAATGTCAAAGCAAAAATTCAGGATAAGGAAGGCATTCCCCCCGATCA 589832 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | | || ||||| || || |||| | | | | | ||||||||| Sbjct 589831 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCCGATTATAA 589772 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| ||||| || Sbjct 589771 CATCCAAAAGGAATCAAC 589754 >seq10 Length=1734888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || || | || || |||| |||||| Sbjct 422831 CAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAG 422890 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 422891 CAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCACCAGA 422950 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | |||||| | |||||||| || ||||||| | | | | | || || Sbjct 422951 CCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCTTGGCTGACTA 423010 Query 24167 TAACATTCAAAAAG 24180 |||||| || |||| Sbjct 423011 TAACATCCAGAAAG 423024 >seq5 Length=26133890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || |||||||| | || || | || || |||| Sbjct 18099599 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 18099658 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 | ||||| || | ||||| || |||| ||||| ||||| || || || || ||| Sbjct 18099659 GTTACCATAGACAATGTCAAGGCAAGGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 18099718 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || || |||| | || ||||| || || |||| ||| | | | || |||||||| Sbjct 18099719 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGA-CTTTGGCAGATTATAA 18099777 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| || |||||||| Sbjct 18099778 CATTCAGAAGGAATCTAC 18099795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429893221905420