Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq15 87.8 2e-12 seq8 87.8 2e-12 seq3 87.8 2e-12 >seq15 Length=715379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || || || || || || || ||| | || ||| | Sbjct 589951 AATGCAAATCTTTGTCAAGACACTTACTGGGAAGACGATAACCTTGGAGGTTGAGAGCTC 589892 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | || ||| ||||||| ||||| |||||| | ||| ||||| Sbjct 589891 GGATACCATAGATAATGTCAAAGCAAAAATTCAGGATAAGGAAGGCATTCCCCCCGATCA 589832 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || || | || |||| | ||| | ||||||||||| Sbjct 589831 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCCGATTATAA 589772 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||| || || ||| | || ||||| | | ||||| || || Sbjct 589771 CATCCAAAAGGAATCAACTCTGCACCTGGTGCTTCGGTTGCGTGGTGG 589724 >seq8 Length=17249391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| ||||||||| ||| | |||| ||| || || ||||| || Sbjct 7852705 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGTAAGCAATTGGAG 7852764 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | || ||||||||||| || || ||||| || | || |||| ||| Sbjct 7852765 GATGGCCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGGTTTTG 7852824 Query 115499 AGATTGCGAGGAGGAA 115514 || || | ||||||| Sbjct 7852825 AGGCTGAGGGGAGGAA 7852840 >seq3 Length=24358521 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| ||| || |||||| | |||| ||| || || ||||| ||| Sbjct 8722789 GATAAGGAAGGCATCCCTCCTGACCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAA 8722848 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||||||||| ||||| ||||| || | || |||| ||| Sbjct 8722849 GATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACGCTTCACTTGGTTTTG 8722908 Query 115499 AGATTGCGAGGAGGAA 115514 || || | ||||||| Sbjct 8722909 AGGCTGAGGGGAGGAA 8722924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425301678803680