Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-33 seq1 125 9e-24 seq6 95.1 2e-14 >seq4 Length=23934096 Score = 158 bits (174), Expect = 2e-33 Identities = 391/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || ||||| |||||||| | |||||| ||||| || || ||||| || | Sbjct 23380663 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGA 23380722 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 |||| ||||| ||||||| || ||||| || ||||||||||| | |||||| | || Sbjct 23380723 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 23380781 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 32830 || ||||| || ||||| || |||||||| | | || | |||| || || || Sbjct 23380782 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 23380839 Query 32831 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 23380840 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGA 23380899 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || | ||| || ||| || || | || || | || || || | | || | Sbjct 23380900 TCGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGC 23380959 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 | ||||| || || || ||||| || ||||| || || || ||||||||| | ||||| Sbjct 23380960 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCT 23381019 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 ||| | ||| ||||| | || | | | || | ||| || || || |||||| Sbjct 23381020 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCAG 23381079 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129 ||| || || || || | || || | || || | || ||| | || ||||| | | Sbjct 23381080 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTT 23381139 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||||| | || | | | ||| || || || | ||||| || || ||||| | Sbjct 23381140 CCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCGG 23381199 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 |||| || ||||| | |||||| || | ||||| || || || ||| Sbjct 23381200 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 23381246 >seq1 Length=26753024 Score = 125 bits (138), Expect = 9e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||| Sbjct 12870853 CCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGG 12870912 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 || ||| |||||||| || ||||| || || |||||||| || |||||||||| || Sbjct 12870913 AACAATGCCATTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 12870972 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || || | ||| ||||| || ||| ||| ||| | || ||| || || || Sbjct 12870973 GTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGT 12871032 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 |||||| ||||| || || |||||||| ||||| || || || |||||| Sbjct 12871033 ATCATAAATGCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 >seq6 Length=21292200 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||| || | ||| |||| ||| ||| | ||||| | || | | || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | | ||| || || || || | ||| || || || || | || | ||| | Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 18348249 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||| || ||||| || ||||| | |||| || || | |||||| | || | Sbjct 18348250 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 18348309 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 18348310 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 Score = 82.4 bits (90), Expect = 1e-10 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| ||| ||||| | |||| | ||| || | |||||| Sbjct 18347783 TCCCCCTTGATCAACATAACGAGCAGTGCTATTAAACACTCGAAGCATAGGCACAATACC 18347842 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || ||||| || ||||| |||||||| || | |||||||||||| ||| || Sbjct 18347843 ATTTGAAGTACCGTTTGTCCCACGAATATAGCTACCTGTTGCACGAATATTATGAATGGA 18347902 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGA 63404 | ||| | || || || ||| | | |||| || ||| || || |||||| | | Sbjct 18347903 GATACCAAGCCCTCCAGCTGATTT-GCTAATAATGGCACATTCCTTCAATGTATCAAAAA 18347961 Query 63405 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 | || | ||||| || || ||||| | || || |||||| Sbjct 18347962 TTCCTTGAATACTGTCGTCTTTCATGCACATAAGGAAGCAGCTA 18348005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633567337854400