Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq15 114 1e-20 seq5 111 1e-19 seq12 105 6e-18 seq3 93.3 4e-14 >seq15 Length=715379 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||| | ||||| || |||||||| | || || ||| || Sbjct 590179 AATGCAAATCTTTGTCAAGACTCTCACCGGAAAGACCATCACATTGGAGGTTGAGAGCTC 590120 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| || ||| |||||||| || || ||||| ||||| Sbjct 590119 CGACACAATTGATAATGTCAAGGCTAAGATCCAAGACAAAGAGGGCATCCCACCAGACCA 590060 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | || |||| ||||| ||| |||||||| Sbjct 590059 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAA 590000 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || ||| | ||||| Sbjct 589999 TATCCAGAAGGAGTCCACCCTCCATCTGGTGCT 589967 >seq5 Length=26133890 Score = 111 bits (122), Expect = 1e-19 Identities = 147/200 (74%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| | ||||||||| || ||| |||||| | || |||||| || Sbjct 18099827 ATGCAAATATTTGTCAGGACTTTGACTGG-AAAGACATCACCCTGGAGGTGGAGGGTTCG 18099885 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | ||||| | ||| ||||| |||||||| ||||||||| Sbjct 18099886 GATACCATAGA--CAATGTCAAGGCAAAGATTCAA-GACAAGGAAGGGATCCCACCTGAC 18099942 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || |||||||||| || || || | || |||| | ||| ||| || || Sbjct 18099943 CAACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGAATAT 18100002 Query 25176 AATATTCAAAAAGAATCCAC 25195 ||||| || || ||||| || Sbjct 18100003 AATATCCAGAAGGAATCTAC 18100022 Score = 109 bits (120), Expect = 5e-19 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| || |||| || | ||||| | || |||||| || Sbjct 18099371 ATGCAAATATTTGTTAAGACGCTGGCCGGAAAGACTATCACTCTTGAGGTGGAGGGTTCG 18099430 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | ||||| | ||| |||||||| || |||||||| || Sbjct 18099431 GATACCAT--AGACAATGTCAAGGCAAAGATTCA-AGACAAAGAGGGAATTCCACCAGAA 18099487 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||| ||||| || || || || ||||||| | | ||| ||| ||||| Sbjct 18099488 CAGCAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGCTGATTAT 18099547 Query 25176 AATATTCAAAAAGAATCCAC 25195 || ||||| || ||||| || Sbjct 18099548 AACATTCAGAAGGAATCTAC 18099567 Score = 109 bits (120), Expect = 5e-19 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||||||||| || || | ||||| | || |||||| || Sbjct 18099599 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 18099658 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | || || || || || | |||| | ||| ||||| |||||||| ||||||||| Sbjct 18099659 GTTACCATAGA--CAATGTCAAGGCAAGGATTCAA-GACAAGGAAGGGATCCCACCTGAC 18099715 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || |||||||||| || || || | || |||| | ||| ||| ||||| Sbjct 18099716 CAACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTAT 18099775 Query 25176 AATATTCAAAAAGAATCCAC 25195 || ||||| || ||||| || Sbjct 18099776 AACATTCAGAAGGAATCTAC 18099795 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||||||||| || || | |||| | || |||||| || Sbjct 18100054 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGAC--TCACTCTGGAGGTGGAGAGTTCG 18100111 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| || |||||||| || || ||||| Sbjct 18100112 GATACCAT--AGACAATGTCAAGGCGAAGATTCA-AGATAAAGAAGGAATCCCTGCTGAC 18100168 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||||||||| || || || |||| |||| | | || | | ||||| Sbjct 18100169 CAGCAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTAT 18100228 Query 25176 AATATTCAAAAAGAATCCAC 25195 || || || || |||||||| Sbjct 18100229 AACATCCAGAAGGAATCCAC 18100248 >seq12 Length=1121147 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | || || ||| ||| Sbjct 23995 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 23936 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| || | ||| ||||| || ||||| ||||| ||| Sbjct 23935 GACACTATTGA--CAATGTCAAAGCTAAGATTCA-AGACAAGGAGGGGATCCCACCGGAC 23879 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || ||||| | || |||| ||| || | | ||||| Sbjct 23878 CAGCAGAGGTTGATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTAT 23819 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || ||| | || || Sbjct 23818 AATATCCAGAAAGAGTCCACTCTCCATCTTGTCCT 23784 >seq3 Length=24358521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| || || ||||||||||| | | |||||||| || || ||||| ||| Sbjct 8722789 GATAAGGAAGGCATCCCTCCTGACCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAA 8722848 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | ||||| || || ||||| || || ||||| || || || | Sbjct 8722849 GATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACGCTTCACTTGGTTTTG 8722908 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 8722909 AGGCTGAGGGGAGGAA 8722924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| | || || ||| || Sbjct 749783 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACTATCACTTTGGAGGTCGAGAGCTCG 749842 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || ||||| ||||| ||||| Sbjct 749843 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 749902 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | || || | || ||| ||| || |||||| Sbjct 749903 CAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGACGGCCGTACTTTGGCTGACTACAAT 749962 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 749963 ATTCAGAAGGAGTCTACCCTTCACCTTGTGCT 749994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433284884405660