Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 152 6e-32 seq10 93.3 5e-14 seq2 93.3 5e-14 seq7 91.5 2e-13 seq6 91.5 2e-13 seq5 87.8 2e-12 >seq4 Length=23934096 Score = 152 bits (168), Expect = 6e-32 Identities = 389/589 (66%), Gaps = 5/589 (1%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| |||||||| |||||| || ||||| || |||| || |||||||| || Sbjct 23380661 GTACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGA 23380720 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | || || | | || || ||||| ||||||||||| | |||||| || Sbjct 23380721 GAACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCC 23380780 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || ||||| ||||||||| ||||| ||||| || || || ||||| | | || Sbjct 23380781 CGAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGA 23380840 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | |||||| || ||||| | ||| || || | | || || | || || Sbjct 23380841 ---GCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATC 23380897 Query 93322 GATAGCGTTAAATAG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 ||| |||| ||| || | ||| ||||||||| || ||||| || || | | | Sbjct 23380898 GATCGCGTGAAAAAGCCTGTTCT-TCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGA 23380956 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | ||||| || || |||| ||||| || || || ||||| |||||||| | || Sbjct 23380957 GGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAG 23381016 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| ||||| | || || | ||||||| || || || || | Sbjct 23381017 CCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGT 23381076 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 | || || || || || || | | || | || || || ||||| || | || Sbjct 23381077 CAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAG 23381136 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 | ||||||| | ||| || | | ||||| || || ||| | ||||| || || || | Sbjct 23381137 TTTCCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCT 23381196 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 | || || |||||||| ||||| || || | ||||| || || || || Sbjct 23381197 CGGCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 23381245 >seq10 Length=1734888 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 409155 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 409212 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||| || |||||| ||| ||||||| Sbjct 409213 GTGGGTTCAAATCCCACAGCTGTCAAATTA 409242 >seq2 Length=42086771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 || ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 12450656 TATAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAG 12450597 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||||| || || Sbjct 12450596 GGCGTGGGTTCAAATCCCACTTCTGACAATTTCTT 12450562 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 3987425 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 3987484 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 3987485 TGGGTTCAAATCCCACTTCTGACA 3987508 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 15368094 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 15368151 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||| | ||||| | ||||||| Sbjct 15368152 GCGTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTGCCAATTTTT 15368196 >seq7 Length=17044513 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 9754001 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 9754060 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| ||||||| || Sbjct 9754061 GTGGGTTCAAATCCCACTTCTGACAATTT 9754089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/99 (80%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 13906452 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 13906509 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| | ||| || |||| ||||| Sbjct 13906510 TTCAAATCCCACAGCTGTC--ATTCTTTTTGGTGTTTTT 13906546 >seq6 Length=21292200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 16214009 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 16214068 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 16214069 GCGTGGGTTCAAATCCCACTTCTGACA 16214095 >seq5 Length=26133890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 22359715 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 22359656 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 22359655 TGGGTTCAAATCCCACTTCTGACAA 22359631 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 23157994 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 23158053 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 23158054 TGGGTTCAAATCCCACTTCTGACA 23158077 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 8/94 (9%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 16823584 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 16823527 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| ||||| ||||||| Sbjct 16823526 CGTGGGTTCAAATCCCACTTCTGAC--ATTATTA 16823495 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 25213326 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 25213383 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 25213384 TTCAAATCCCACAGCTGTCAAA 25213405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556803972355360