Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 271 1e-67 >seq4 Length=23934096 Score = 271 bits (300), Expect = 1e-67 Identities = 587/867 (68%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| ||| |||||| |||||||||||||| || ||| ||||||||| Sbjct 23381237 GATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGC 23381178 Query 42344 CGAGGAGATTGACCTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 ||||||| |||| || | ||||| ||| | ||||| | || | ||| Sbjct 23381177 CGAGGAGGTTGATCTCTGCCAGGACCTACGCCAT--TGGGAAACTCTAACCCCTGGCGAG 23381120 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| ||| ||| || | || ||||||||||| |||||||||||||| || ||| Sbjct 23381119 AAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTTTTGGAG 23381060 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 || || ||| ||||||||||| || || ||| || ||||| ||| |||||||||| Sbjct 23381059 AATCTCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGCGCCTTCTACGGC 23381000 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||| | ||||| ||| ||||| | || || | || ||| Sbjct 23380999 TTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTGGAGACCTAC 23380940 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| | | |||| ||| |||| || | || || || || || |||||| || Sbjct 23380939 ATCAAGGACTCGGACGAGAAGAACAGGCTTTTTCACGCGATCGATACCATTCCCTGCGTC 23380880 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | |||||||| | ||||| || ||||||||| | | || | |||| | ||| Sbjct 23380879 ACCAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTCAGA---ATCGTTTGCGGAG 23380823 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || | || |||||| | ||| || || || ||||||||||| || | | || Sbjct 23380822 CGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATA 23380763 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||||| ||| || | || ||||| ||||| || ||||| ||||| | ||| Sbjct 23380762 TTTTGGCTAAAGAAGCGCGGGTTAATGCCGGGACTGACGTTCTCAAACGAGTTGATCTCG 23380703 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 || || ||||| |||| | ||||| || ||| | |||| |||| | || ||| | Sbjct 23380702 AGAGATGAGGGTTTGCACTGCGACTTCGCGTGCTTGCTGTACTCG---CTGCTGAGGAAG 23380646 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG-GAGGCCGTGGAGATCGAGAAGGA 42940 |||| |||| || || | | ||||| ||| | || |||||||| |||| || Sbjct 23380645 AAGCTGAGCGAGGATCGAGTGAAGTCGATCAT-ACGAAATGCGGTGGAGATAGAGAGAGA 23380587 Query 42941 GTTCCT-CACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||| | || || || | ||||| | ||||| || |||||| ||| || ||| || Sbjct 23380586 GTTCGTGTGCGAAG-CG-TTACCGTGCGCTCTGGTGGGAATGAACGGCGATCTGATGAGC 23380529 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| ||| || || || ||| | || | || | | | ||| Sbjct 23380528 CAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGGTGAGCTTGGGTACGGGAAGATTTAC 23380469 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || || | ||| ||||| | |||||| ||| || |||| |||||||| ||| Sbjct 23380468 AATGTGCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAATTTT 23380409 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| | || | || |||||| Sbjct 23380408 TTCGAGAAGAGGGTTGGGGAGTACCAG 23380382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944242830184640