Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 seq12 87.8 1e-12 seq15 84.2 2e-11 >seq8 Length=17249391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || ||||| |||||||| ||||||||| ||||| |||||||| Sbjct 7852838 CCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTGCA 7852779 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || ||||||||||| || ||||| |||| | ||||||||| Sbjct 7852778 AGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGATC 7852726 >seq12 Length=1121147 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| |||||||||||||| || ||| ||||| ||||||||||| ||| | ||| Sbjct 24006 AGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCC-AGAGTCCT 24064 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || ||||||||||| || ||||| ||||| | ||||||||| || | || || Sbjct 24065 TCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTC 24124 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGAT-TCGCATTCGA 34084 |||||| ||| || ||| | || | || |||||| || | ||| || | Sbjct 24125 CTTGTCCTGAATCTTCGCCTTCACATTGTCAATC---GTATCAG-AGCTCTCGACCTCCA 24180 Query 34085 CCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| || || || || || ||||| || || ||||| Sbjct 24181 AAGTTATTGTCTTCCCTGTGAGGGTCTTCACGAAAATCTGCAT 24223 >seq15 Length=715379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||||| ||| |||||| ||||||||||| || | | Sbjct 547990 CCACCACGCAGTCGAAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG-C 547932 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || || | ||||| || ||||| |||| | |||||| || || Sbjct 547931 AAGGGTCCTTCCATCCTCGAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 547872 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| |||||| ||||| ||| | | | | |||||| || || || Sbjct 547871 AATACCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCAG-AGCTTTCCA 547813 Query 34080 -TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| ||||| || |||||||||||||| ||||| Sbjct 547812 CTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397022892787528