Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 109 1e-18 >seq2 Length=42086771 Score = 109 bits (120), Expect = 1e-18 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 149213 GTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGG 149272 |||||| | ||||||| ||| |||||||| || || ||||| || | || ||||| Sbjct 34575758 GTAAGCCTGGCACATCTTGATCCCGGCGATCTTGGCAATCGCATACCACTCATTTGTGGG 34575699 Query 149273 TTCGAGAAATCCTGTCATCAGATATTCTTCCTTG-ATAGGATTTTGAGCTTCTTTTGGGT 149331 || ||| || || | || || ||| | | ||||| | | |||| || |||| Sbjct 34575698 CTCCAGAGGGCCCGTTAACA-ATGCGCTTTCGGGGATAGGCTGTGGAGCGAACTTGGGGT 34575640 Query 149332 AAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGAA 149391 |||| ||| | |||||||||| ||| || ||||||||||| | || || | | Sbjct 34575639 AAATACAAGAGGAGCCGAGAAACAAGAGCTTCTTCACTCCGAATCGGTACGAGGCGTCGA 34575580 Query 149392 TGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCG 149451 | ||||| ||||| ||| ||||| || || ||||| || | | | |||||| | Sbjct 34575579 TCACATTGGTCTGGATCTGGAGATTGACGGCGATGAAATCTGCCGGGTATGTGTTGTTGG 34575520 Query 149452 CGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTATT 149493 ||||||| || || |||||||| |||||||| | ||| ||| Sbjct 34575519 CGTGAATGCCGCCAACTTTTGCCGCCGCGAGGATGACGAATT 34575478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102764637373400