Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 4e-15 seq2 93.3 5e-14 >seq4 Length=23934096 Score = 96.9 bits (106), Expect = 4e-15 Identities = 298/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| ||||||||| || || |||||||| | || |||||| |||||| Sbjct 23380385 GTACTCCCCAACCCTCTTCTCGAAAAAATTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 23380444 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 |||| || ||||||| || |||| | ||||| || || || | Sbjct 23380445 CCAATCGAACGGGTTCTGCACATTGTAAATCTTCCCGTACCCAAGCTCACCCAGCAGCCT 23380504 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||||| ||| |||| ||||||| |||| || |||||| || | || || Sbjct 23380505 ATCCGCCACGAACTCGATGTACTGGCTCATCAGATCGCCGTTCATTCCCACCAGAGCGCA 23380564 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG-CGT 125996 || | ||| || | | |||| | |||| || ||||| || | || | ||| | | | Sbjct 23380565 CGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCATTTCGTATGATCGACTT 23380624 Query 125997 GAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 126054 | | | ||| | | ||| | | || | || | | | || |||| | || || Sbjct 23380625 CACTCGA-TCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAAGCACG-CGAAGTC 23380681 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||| || | ||||| | || || ||||| |||||| ||||| | Sbjct 23380682 GCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGAACGTCAGTCCCGGCATTAA 23380741 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || |||||||| | ||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 23380742 CCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCAC 23380801 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || || || | || ||||| ||||| || Sbjct 23380802 GCAAGCAAAGGCCACGATCCGCTCCGCAAACGA 23380834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| || || | ||| ||||| || | |||| ||| || || | | ||||| Sbjct 8567878 GTCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAA 8567937 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || ||||| || ||||| | ||||||||| | ||||||||| | | Sbjct 8567938 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCC---CCC 8567994 Query 10939 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || | | | |||| || || || ||||||||||| | || || || || Sbjct 8567995 ACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 8568054 Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 ||| ||| || ||| |||| ||| | ||| || |||| ||||| ||||| Sbjct 8568055 AGGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 8568112 Query 11054 ACAAACATTTCCACAAA 11070 ||||||||||| ||||| Sbjct 8568113 ACAAACATTTCAACAAA 8568129 >seq2 Length=42086771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| | Sbjct 14879405 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--A 14879462 Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || ||| || | | ||| | || || || ||||| ||||| ||||| || || Sbjct 14879463 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATG 14879522 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| | ||| || ||| || || | || || |||||| ||||| || || Sbjct 14879523 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCC 14879581 Query 11053 CACAAACATTTCCACAAAAT-TG--GCGGCGGAACATTGGATGAAGGGGACGTTGGATTC 11109 |||||||| |||||| || | || || ||| || | || || || || | || Sbjct 14879582 CACAAACAATTCCACGAACTCTGAAGCTGCGCAAGA---GAAAAACGGCACCCCAGCCTC 14879638 Query 11110 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 || || | ||| || || || |||||||| || || |||||| Sbjct 14879639 GCCGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGT 14879681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597292640065120