Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq15 116 4e-21 seq3 116 4e-21 seq960 95.1 1e-14 seq2 93.3 5e-14 seq10 86.0 7e-12 >seq15 Length=715379 Score = 116 bits (128), Expect = 4e-21 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | ||| |||||| || ||||||||||||||||| || || | || || Sbjct 589969 CACCAGATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGGCCATCCTC 590028 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| || ||||| | ||||||||| | ||| | || ||| ||||| Sbjct 590029 AAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 590088 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| || |||| | | | ||||| |||| || || || | |||||||| Sbjct 590089 GATCTTAGCCTTGACATTATCAATTGTGTCGGAGCTC---TCAACCTCCAATGTGATGGT 590145 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || ||||| ||||||||||||||| Sbjct 590146 CTTTCCGGTGAGAGTCTTGACAAAGATTTGCATT 590179 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || || ||||| || || || ||||| || || || | Sbjct 547751 ACGGAGCACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCC 547692 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||||||||||||||| ||||| | ||||||||| | || | || |||||| Sbjct 547691 ATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTT 547632 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 |||| ||| ||| |||| | | | || || ||| ||| || || | || Sbjct 547631 GTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCCGAGCT---TTCAACTTCCAAGGT 547575 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || || ||||| |||||||||||||| Sbjct 547574 GATTGTCTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 547536 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | | || || ||||||||||| || || Sbjct 548183 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAA 548124 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 548123 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 548065 Query 42136 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | || ||||| ||||| || || |||| Sbjct 548064 TATCAATTGTATC---CGAACTCTCCACCTCCAATGTTATGGTCTTGCCAGTCAGAGTCT 548008 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 548007 TCACAAAGATCTGCAT 547992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 589303 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 589362 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | |||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 589363 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 589421 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 589422 TATCAATGGTATCAGAACTC---TCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCT 589478 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 589479 TCACAAAGATCTGCAT 589494 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||||||||| ||||| ||||| || |||| | || || Sbjct 547973 CACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC 547914 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || || || || | | ||||||||| | || | | |||||||||| Sbjct 547913 GAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 547854 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 |||||| |||| | | | || || ||| |||||| || | || ||||| Sbjct 547853 GATTTTGGCCTTGACATTATCAATAGTATCAGAGCT---TTCCACTTCCAGAGTAATGGT 547797 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || || |||||||| ||||| Sbjct 547796 TTTCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || || | ||| || || | ||| |||||| || || ||||| || || Sbjct 527509 ACCACCACGTAGTCGGAGCACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 527450 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 527449 AAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 527390 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | || |||||||||| ||| ||| |||| | | | || || ||| ||| Sbjct 527389 AATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTC 527333 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 || || | ||||| || || || || || ||||| ||||||||||||| Sbjct 527332 AACTTCCAAGGTGATTGTCTTCCCGGTAAGGGTCTTGACAAAGATTTGCA 527283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || || ||||| || || || || | || || |||||||| ||||| || Sbjct 589760 TCCTTTTGGATGTTATAATCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAG 589819 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| | |||||| |||| || | || ||||| ||| ||| |||||| ||||| | Sbjct 589820 ATGAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTATCC-TGAATTTTTGCTTTGACATT 589878 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || || |||| || || || | || || || || || || || ||||| Sbjct 589879 ATCTATGGTATCCGAGCTC---TCAACCTCCAAGGTTATCGTCTTCCCAGTAAGTGTCTT 589935 Query 42194 TACAAAGATTTGCATT 42209 ||||||||||||||| Sbjct 589936 GACAAAGATTTGCATT 589951 >seq3 Length=24358521 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || || || |||| || |||||||| |||||||| Sbjct 746850 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAA 746791 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 746790 GATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 746731 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || ||||| || | |||||||| ||||| || || || || || Sbjct 746730 GTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCAC 746671 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 746670 GAAGATTTGCAT 746659 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| ||| | || | || |||||| ||||||||||| ||||| Sbjct 750010 ACCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAGC 749951 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || |||| || |||||||| || || || || | | ||||||||| | ||| Sbjct 749950 CAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGTGG 749891 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| || || | | | | ||||| |||| || Sbjct 749890 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCCGAGCTC---TC 749834 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 749833 GACCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 749783 >seq960 Length=1739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 1218 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 1277 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | |||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 1278 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 1336 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 1337 TATCAATGGTATCAGAACTC---TCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCT 1393 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 1394 TCACAAAGATCTGCAT 1409 >seq2 Length=42086771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 18566658 TCCTTCTGGATGTTGTAATCTGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 18566599 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||||||| ||| || || | | Sbjct 18566598 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 18566539 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || || | || ||||| || |||||||| || || || Sbjct 18566538 TCAATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 18566479 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 18566478 AAGATCTGCATGTT 18566465 >seq10 Length=1734888 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || || || ||||||| || || | || || |||||||| ||||| || Sbjct 423025 CCTTTCTGGATGTTATAGTCAGCCAAGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAA 422966 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||||||||| | ||| | || ||||||||| ||| || |||| | Sbjct 422965 ATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 422906 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| || || |||| |||||||| || || ||||| || || || Sbjct 422905 TCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACG 422846 Query 42198 AAGATTTGCATTTT 42211 || || ||||| || Sbjct 422845 AAAATCTGCATCTT 422832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543157365133760