Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq8164 82.4 8e-11 seq3 82.4 8e-11 seq1 82.4 8e-11 >seq8164 Length=157712 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 38077 GCGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 38018 Query 92675 CCC 92677 ||| Sbjct 38017 CCC 38015 >seq3 Length=24358521 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 15789373 GCGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 15789432 Query 92675 CCC 92677 ||| Sbjct 15789433 CCC 15789435 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 15790319 GCGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 15790378 Query 92675 CCC 92677 ||| Sbjct 15790379 CCC 15790381 >seq1 Length=26753024 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 12885717 GCGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 12885658 Query 92675 CCC 92677 ||| Sbjct 12885657 CCC 12885655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526544660633280