Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq960 93.3 4e-14 seq15 93.3 4e-14 >seq3 Length=24358521 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | |||||||||| || ||||||||||| Sbjct 746886 GCCACCACGCAGACGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 746827 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||||||| || || || | |||| |||||||| ||||| ||||| Sbjct 746826 GAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 746767 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || || | ||||| | | |||||| | ||||||| Sbjct 746766 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGT-CGATGGTGTCAGATGACTCCA 746708 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || ||||| || || || ||||| Sbjct 746707 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 746659 >seq960 Length=1739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 1183 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCA 1242 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| || || ||||||| | |||| || | || ||||||||||| Sbjct 1243 AGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGA 1302 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | ||| | | || | ||| || | |||||| Sbjct 1303 ATGCCCTCCTTGTC-CTGAATCTTAGCTTTCACATTATCAATGGTATCAGAACTCTCCAC 1361 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || ||||| || || || ||||| |||||||| Sbjct 1362 CTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 1409 >seq15 Length=715379 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 589268 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCA 589327 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| || || ||||||| | |||| || | || ||||||||||| Sbjct 589328 AGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGA 589387 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | ||| | | || | ||| || | |||||| Sbjct 589388 ATGCCCTCCTTGTC-CTGAATCTTAGCTTTCACATTATCAATGGTATCAGAACTCTCCAC 589446 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || ||||| || || || ||||| |||||||| Sbjct 589447 CTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 589494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 548218 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCA 548159 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| || || ||||||| | |||| || | ||| ||||| ||||| Sbjct 548158 AGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGA 548099 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | || | | || | || || | |||||| Sbjct 548098 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATTATCAATTGTATCCGAACTCTCCAC 548040 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||||||| || ||||| |||||||| Sbjct 548039 CTCCAATGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 547992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || || || || | | Sbjct 590213 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCA 590272 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| |||||||| || ||||| || ||||| ||| || ||| | | Sbjct 590273 AAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACA 590332 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||| ||||||| || | || || || || || ||||| Sbjct 590333 TTG-TCGATCGTGTCAGAGCTCTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTTTT 590391 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 590392 CACAAAGATCTGCAT 590406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496211756422080