Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq15 100 2e-16 seq12 86.0 4e-12 seq10 82.4 5e-11 >seq15 Length=715379 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| || | || || ||||| || || || ||||| |||||||| || Sbjct 547990 CCACCACGCAGTCGAAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 547931 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | || || | || || || || | ||||| | ||| ||||| ||| Sbjct 547930 AGGGTCCTTCCATCCTCGAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 547871 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| || ||| | || |||||||| |||| || Sbjct 547870 ATACCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCAGAGCTTTCCACT 547811 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 547810 TCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAAGATCTGCATA 547763 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 548194 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 548135 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | | ||| ||||| ||||| || |||||||| ||| ||| Sbjct 548134 TTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTG 548075 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | | || || || || || ||||| || || ||| Sbjct 548074 GCCTTCACATTATCAATTGTATCCGAACTCTCCACCTCCAATGTTATGGTCTTGCCAGTC 548015 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| Sbjct 548014 AGAGTCTTCACAAAGATCTGCAT 547992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||||||| ||| | | | || || Sbjct 547288 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCA 547229 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | || | | ||| ||||| ||||| ||||||||||| Sbjct 547228 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 547169 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || |||| || || | ||| ||||| || Sbjct 547168 ATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTG 547109 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| ||||| Sbjct 547108 CCTGTGAGGGTTTTCACGAAAATCTGCAT 547080 >seq12 Length=1121147 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | |||||| || || ||||| || ||||||||||| Sbjct 23995 TGCCACCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCG 24054 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || ||||| || ||||| | |||| | ||| || || | Sbjct 24055 CCAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 24114 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| || || ||| | || || ||||| | || | Sbjct 24115 GAATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCGA 24174 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || ||||| || || || || ||||| |||||| Sbjct 24175 CCTCCAAAGTTATTGTCTTCCCTGTGAGGGTCTTCACGAAAATCTGCATA 24224 >seq10 Length=1734888 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | || |||||||| | ||||||||||| ||||| |||||| || |||||| Sbjct 422989 TCTTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTG 422930 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| || ||| | || || || ||||| | || || || | || ||| Sbjct 422929 TCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATG 422870 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || ||||| || ||||| ||||| || Sbjct 422869 GTCTTCCCGGTTAGGGTTTTCACGAAAATCTGCATCTT 422832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357356439942740