Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=42086771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 |||||||||||||| ||||| || ||||| ||||| || || | ||||||||| | | Sbjct 14879406 AAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--AC 14879463 Query 12852 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | || ||| || | | ||| | || || || ||||| || |||||||| || || | Sbjct 14879464 CTCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGC 14879523 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | ||| || ||| || || | || ||||||||| ||||| || ||| Sbjct 14879524 ACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCC 14879582 Query 12969 ACAAACATCTCCACAAAAT-TG--GCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 13025 ||||||| ||||| || | || || ||| || | || || || || | || Sbjct 14879583 ACAAACAATTCCACGAACTCTGAAGCTGCGCAAGA---GAAAAACGGCACCCCAGCCTCG 14879639 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || || | ||| || || || |||||||| || || || ||| Sbjct 14879640 CCGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGT 14879681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613444591590240