Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 190 3e-43 >seq4 Length=23934096 Score = 190 bits (210), Expect = 3e-43 Identities = 553/839 (66%), Gaps = 23/839 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||||||||| |||||||| |||| || | || ||||| | |||| |||| Sbjct 23380399 TCTTCTCGAAAAAATTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAATCGAACGGGT 23380458 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| ||| | || |||| | || || | |||||| ||| || ||||| || | Sbjct 23380459 TCTGCACATTGTAAATCTTCCCGTACCCAAGCTCACCCAGCAGCCTATCCGCCACGAACT 23380518 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 ||||||| | |||| | || | ||| || |||| ||| | |||| | |||||| Sbjct 23380519 CGATGTACTGGCTCATCAGATCGCCGTTCATTCCCACCAGAGCGCACGGTAA-CGCTTCG 23380577 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| ||||| |||| ||||| ||||| || || | ||| | || || || | Sbjct 23380578 CACACGAACTCTCTCTCTATCTCCACCGCATTTCGT-ATGATCGACTTCACTCGATCCTC 23380636 Query 159886 CCCCGGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 | | |||| | || | || |||| | |||||| ||||||||||||| Sbjct 23380637 GCTCAGCTTCTTCCTCAGCAGCGAGT------ACAGCAAGCACGCGAAGTCGCAGTGCAA 23380690 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 ||||| || | ||||| |||||||| || | | || |||||||| | ||| ||| Sbjct 23380691 ACCCTCATCTCTCGAGATCAACTCGTTTGAGAACGTCAGTCCCGGCATTAACCCGCGCTT 23380750 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061 || |||||||| || | ||||||| | || | | || || ||||| |||||| |||| Sbjct 23380751 CTTTAGCCAAAATATCG-CGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCAAGCAA 23380809 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | ||||||| || ||| |||| || | | | | | | |||| | | |||||| | Sbjct 23380810 AGGCCACGATCCGCTCCGCAAACGA---TTCTGAGCCGTCGATCCAGCGTAGGGCCCACT 23380866 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 |||||||| | || ||| || ||| |||| |||| ||| | |||| || ||| | Sbjct 23380867 GGGCCTTCTTGGTGACGCAGGGAATGGTATCGATCGCGTGAAAAAGCCTGTTCTTCTCGT 23380926 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | |||||||| || | | || |||||| || | ||| | || |||| Sbjct 23380927 CCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGA 23380986 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAAC 160300 |||| ||||| ||| |||||| ||||| ||| ||| || |||| ||||| Sbjct 23380987 TGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAGA-CCTGGACTTCCTTCATGAAC 23381045 Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 ||| | ||||| | ||| | ||||| | ||| || ||||| || | |||||| Sbjct 23381046 CTTCCGGCGAGATTCTCCAAAACGATGCCGTCAGAGGCAGCGAAGAAGGCGAGCACGTGG 23381105 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420 | |||||| || ||||| | | | || ||||||| || | ||| ||| Sbjct 23381106 GTGATGAAGTGCTTCTCGCCAGGGGTTAG---AGTTTCCCAATGGCGTAGGTCCTGGCAG 23381162 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||||||||| || ||| |||| || ||||| || | |||||||| ||||||| Sbjct 23381163 AGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTCCCAGAT 23381221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795074054411840