Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq2 100 4e-16 >seq4 Length=23934096 Score = 131 bits (144), Expect = 2e-25 Identities = 309/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || || || || | |||| ||||| || | | |||||| Sbjct 8567879 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAAA 8567938 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| |||| |||||||| | ||||||||| | | | Sbjct 8567939 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATT---TCCCCCA 8567995 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 8567996 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 8568055 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 ||| ||| || || |||| ||| ||||| || || || || || ||||||| Sbjct 8568056 GGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAA 8568113 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 ||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 8568114 CAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 8568172 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| || || | |||||||| || || ||||| ||| | || || | ||| Sbjct 8568173 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCT 8568232 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 ||||| || ||| || | | |||||||| | ||| | || ||||||| | Sbjct 8568233 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAAGAATTCCACAACC 8568292 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || | || || | ||||| | || | ||| ||||||| Sbjct 8568293 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 8568333 >seq2 Length=42086771 Score = 100 bits (110), Expect = 4e-16 Identities = 254/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| | Sbjct 14879405 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--A 14879462 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || ||| || | | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 14879463 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATG 14879522 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| | || || || | ||||| || | | || ||||| | Sbjct 14879523 CACGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTC 14879580 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| ||||| || | || || | || || || || || || || | Sbjct 14879581 CCACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGC 14879640 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | || | ||| || || ||||| ||||| || ||||| || |||| | | || | Sbjct 14879641 CGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGTGGACCCACCAAAAGACAGC 14879700 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || ||| || ||||| ||| || ||| | || || | ||| | ||||| || | Sbjct 14879701 CTTTTGGGATTTTGGCTCCAAGGGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCA 14879760 Query 16330 TCTCTTCCAATT-CATCTTTG 16349 ||| | || || || ||||| Sbjct 14879761 CCTCCTGCAGTTCCAGCTTTG 14879781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620679053238080