Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq2 95.1 1e-14 >seq4 Length=23934096 Score = 131 bits (144), Expect = 2e-25 Identities = 309/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || ||||| || | |||| ||||| || | |||||| Sbjct 8567879 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAAA 8567938 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||| || |||| |||||||| | ||||||||| | | | Sbjct 8567939 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATT---TCCCCCA 8567995 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | | |||| ||| || |||||||| ||||||| || ||||| || Sbjct 8567996 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 8568055 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 ||| ||| || ||| | | ||| ||||| ||||| | || || ||||||||| Sbjct 8568056 GGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACA 8568115 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 ||||| || ||||| | | | | | || | || || || ||| || |||||| || Sbjct 8568116 AACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGC 8568174 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || || | |||||||| || || ||||| ||| | || | | ||||| Sbjct 8568175 AATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAA--GAACCCCT 8568232 Query 9581 T--GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 | ||||| || ||| || | | |||||||| | ||| | || ||||||| | Sbjct 8568233 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAAGAATTCCACAACC 8568292 Query 9639 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || | || || | ||||| | || | ||| ||||||| Sbjct 8568293 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 8568333 >seq2 Length=42086771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||| || || |||| ||||||||| | Sbjct 14879405 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--A 14879462 Query 9341 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | || ||| || | | ||| | ||||| |||||||||||||||||||| ||||| Sbjct 14879463 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATG 14879522 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | ||| | || || | || || || || || ||||| || Sbjct 14879523 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCC 14879581 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||||| || | || || | || || || || || || || || Sbjct 14879582 CACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCC 14879641 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | ||| || || ||||| ||||| || ||||| || Sbjct 14879642 GGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGG 14879680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589920592459360