Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq8164 581 4e-161 seq5 221 1e-52 seq7 170 2e-37 >seq8164 Length=157712 Score = 581 bits (644), Expect = 4e-161 Identities = 721/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 1353 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1294 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | | ||| || ||| |||| || ||||||||||| || || || Sbjct 1293 ACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCAGTAGA 1235 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| || || || | |||||||| | || || || | ||||||||||| || || || Sbjct 1234 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACAATATTATTTC 1175 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||||| || |||| | || || || ||| | ||||| ||||| || |||||||| Sbjct 1174 TGGTGCCATTATTCCTACCTCTGCAGCTATAGGTTTGCACTTTTACCCGATATGGGAAGC 1115 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 ||| | | ||||| |||||||| || ||||||||||| | | | | | ||||| Sbjct 1114 GGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 1055 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858 | || | || | || |||||||||| | |||||||| | | | | || ||||| Sbjct 1054 CTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 995 Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918 | | |||||||| |||||| |||||||| || || | || || ||| || ||| | Sbjct 994 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 935 Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAAC 168978 |||| ||| ||||||| || || ||||| |||||||| |||||||| || || || Sbjct 934 GATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAATCTCCGGTAC 875 Query 168979 ATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATAT 169038 |||||||||||| | ||||||||||| ||||||||||| |||||||| || || || || Sbjct 874 TTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACAT 815 Query 169039 GGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGT 169098 | ||| ||||| ||| | ||||| || || |||||| || |||||||| || | || Sbjct 814 GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTCCTTGGT 755 Query 169099 AACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTT 169158 ||| ||| | | ||||| || || || || | |||||| || | ||||||| || Sbjct 754 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 695 Query 169159 CGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAAT 169218 ||||||||| ||||||||||||||||| || || || ||||| || || || |||| || Sbjct 694 CGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 635 Query 169219 CTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCC 169278 |||||| ||||| ||||||||||| || | | | || ||||||||||| | | || Sbjct 634 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCC 575 Query 169279 AGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGG 169338 || ||| || | ||||| ||| || | |||||| | || ||||| |||||||| || || Sbjct 574 TGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGG 515 Query 169339 ATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGA 169398 ||||| || || ||||| || || ||| | | ||| | ||| ||| |||| ||| Sbjct 514 TTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGA 455 Query 169399 CGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTT 169458 | ||||| | || ||||||||||||||||| |||||||| ||||| ||||| || || Sbjct 454 TATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 395 Query 169459 CCCACTAGACTTAGCATCTGCTGA 169482 ||| ||||| |||| ||| ||| Sbjct 394 CCCTCTAGATCTAGCTGCTGTTGA 371 >seq5 Length=26133890 Score = 221 bits (244), Expect = 1e-52 Identities = 250/335 (75%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| ||||||||||| ||||||||||||||||| || || || ||||| || || Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 169267 || |||| |||||||| ||||| |||||| |||| || | | | || || |||||| Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 169268 GCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 169327 || | | || || ||| || | ||||| ||| || | |||||| | || ||||| ||| Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 9071393 Query 169328 AACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCT 169387 ||||| || || ||||| || || ||||| || || ||| | | ||| | ||| | Sbjct 9071394 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 9071453 Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 | |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| Sbjct 9071454 AATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 9071513 Query 169448 GCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 ||||| || ||||| ||||| |||| ||| ||| Sbjct 9071514 GCTCATAATTTCCCTCTAGATCTAGCTGCTGTTGA 9071548 >seq7 Length=17044513 Score = 170 bits (188), Expect = 2e-37 Identities = 352/534 (66%), Gaps = 45/534 (8%) Strand=Plus/Minus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| ||||| |||| ||||| ||||| || |||||||| Sbjct 8091333 TGGATAACTAGCACTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 8091274 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | |||| || ||| |||| || |||| |||||| || || || Sbjct 8091273 ACTTTATTGACCGCAACTT-ATGTATTTATTATTGCTTTCATTGTTGCACCTCCAGTAGA 8091215 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| || || || | |||| ||| | || || || | ||| ||||||| || || || Sbjct 8091214 TATTGATGGTATTCGTGAACATGTTTCTGGATCTTTACTTTATAGAAACAATATTATTTC 8091155 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||||| || |||| | || | || || ||| | ||| Sbjct 8091154 TGGTGCCATTATTCCTACCTCTATAGCTATAGGTTTGCAC-------------------- 8091115 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 | |||||||||||||| | | | | | || || Sbjct 8091114 -----------------------ACAATGGTGGTCCTTATGAACTAATTGTTCTACAGTT 8091078 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858 | || | || || || |||||||||| | |||||||| | | | | || ||||| Sbjct 8091077 CTTACTTGGTATAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 8091018 Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918 | | |||||||| |||||| |||||||| | || | || || ||| || || | Sbjct 8091017 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACTGCTGTTTTTTT 8090958 Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAAC 168978 |||| ||| ||||||| || || |||||||||||||| |||||||| || || | Sbjct 8090957 GATATATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTAT 8090898 Query 168979 ATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTT 169032 |||||||||||| | ||||||||||| ||||||||||| |||||||| || || Sbjct 8090897 TTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATT 8090844 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936 ||| |||||||| || || | || || ||| || ||| | |||| ||| ||||||| Sbjct 8087222 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTGGTCA 8087163 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGT 168996 || || |||||||||||||| |||||||| || || | |||||||||||| | || Sbjct 8087162 AGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGT 8087103 Query 168997 ATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||||||||| ||||||||||| |||||||| Sbjct 8087102 ATTCCAAGCTGAGCACAACATCCTTATGCA 8087073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564383998734720