Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq8164 547 2e-151 seq5 208 2e-49 seq7 170 6e-38 >seq8164 Length=157712 Score = 547 bits (606), Expect = 2e-151 Identities = 725/999 (73%), Gaps = 14/999 (1%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| ||||| || || ||||| || || || ||||| ||||||||||||||||| Sbjct 371 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 430 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || || ||||||| ||| ||||||||||| | || | || | |||| Sbjct 431 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 490 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || |||||||| ||||| || || | || |||||||||||| || || | | Sbjct 491 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 550 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 ||||||| ||| || | || ||||||||||| ||||||||||||||| || | Sbjct 551 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 610 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 611 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 670 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 671 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 730 Query 36324 GTTTCACGAAT--AAGT-GAGGAAGTAACAAG-ACTTCCGTGCATAGCAGCGAATAAAGC 36379 ||||| | || || | |||| || |||| || || ||||||||| ||||| | Sbjct 731 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAC--CCATGCATAGCACTGAATAGGGA 786 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || || || | ||| || || || ||||||||||| ||||| || Sbjct 787 GCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 846 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 || || || |||| ||| || |||||||| || || || || || |||||||| ||||| Sbjct 847 AGCTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGA 906 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 || || ||||| |||| || || | ||||| |||||| || ||||||||||| || Sbjct 907 AAAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 966 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 967 TGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 1026 Query 36620 TCCCA---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCC 36676 |||| || ||||| | ||||| | ||||| | ||||| |||| ||| || || Sbjct 1027 ACCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACC 1083 Query 36677 TCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 36736 ||||| |||||||| || || | || || |||||||| || ||||| ||||| | ||| Sbjct 1084 ACCGTTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACC 1143 Query 36737 GATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGC 36796 || || || | || | || || ||||| || || ||||||||||| ||||| | Sbjct 1144 TATAGCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGA 1203 Query 36797 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 36856 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct 1204 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAAT 1263 Query 36857 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 36916 | |||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 1264 AATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 1323 Query 36917 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || || ||||| | || || || | ||||| ||| || Sbjct 1324 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq5 Length=26133890 Score = 208 bits (230), Expect = 2e-49 Identities = 247/335 (74%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| ||||| || || ||||| || || || ||||| ||||||||||||||||| Sbjct 9071548 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 9071489 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || || ||||||| ||| ||||||||| | | || | || | |||| Sbjct 9071488 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCA 9071429 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || |||||||| ||||| || || | || |||||||||||| || || | | Sbjct 9071428 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 9071369 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 ||||||| ||| || | || ||||||||||| ||||| ||||||||| || | Sbjct 9071368 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAA 9071309 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || | || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 9071308 TTGTCGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 9071249 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 36298 ||||| || ||||| ||||| |||||| | || || Sbjct 9071248 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACC 9071214 >seq7 Length=17044513 Score = 170 bits (188), Expect = 6e-38 Identities = 360/545 (66%), Gaps = 49/545 (9%) Strand=Plus/Plus Query 36414 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCT 36473 || || ||||||||||| ||||| || || || || |||| ||| || |||||| | || Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 36474 GAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAAT 36533 || || || || |||||||||||||| || || ||||| |||| || || | || || Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 36534 ACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCT 36593 |||||| || ||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 8090964 ACAGCAGTAGCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCC 8091023 Query 36594 AGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATACCAATGAGAAAG 36650 || | ||||||||||||| | || |||| || ||||| ||||||| | || Sbjct 8091024 AGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT---ATACCAAGTAAGAAC 8091080 Query 36651 TGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCT 36710 || | ||||| |||| ||| || || |||| ||| Sbjct 8091081 TGTAGAACAATTAGTTCATAAGGACC-----------ACCA-----------TTG----- 8091113 Query 36711 TCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAG 36770 ||| | ||| || || | || | || | || || ||||| Sbjct 8091114 ----------------TGTGCAAACCTATAGCTATAGAGGTAGGAATAATGGCACCAGAA 8091157 Query 36771 ATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCC 36830 || || ||||||| ||| ||||| | ||| || ||| | |||||||||||||| ||||| Sbjct 8091158 ATAATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCT 8091217 Query 36831 ACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGG 36890 || ||||| ||| ||| || ||||| | |||| | ||| || || | | |||| Sbjct 8091218 ACTGGAGGTGCAACAATGAAAGCAATAATAAATACATAAGTTGCGGTCAATAAAGTAGGG 8091277 Query 36891 ATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCA 36950 ||||| | || |||||||| || | || || |||| | || || || | ||||| | Sbjct 8091278 ATCATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTTA 8091337 Query 36951 CATAA 36955 || || Sbjct 8091338 CAAAA 8091342 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 36420 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 36479 ||||||||||| ||||| || || || || |||| ||| || |||||| | || || || Sbjct 8087073 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCGGAGATT 8087132 Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 || || |||||||||||||| || || ||||| |||| || || | ||||| |||||| Sbjct 8087133 CCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCA 8087192 Query 36540 AATGCTGCTGCAACAGGGGCTGAATAAGC 36568 || ||||||||||| |||||||| || Sbjct 8087193 GTAGCAGCTGCAACAGGAGCTGAATATGC 8087221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150439813822056