Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq8164 560 3e-155 seq5 239 1e-58 seq7 190 6e-44 >seq8164 Length=157712 Score = 560 bits (620), Expect = 3e-155 Identities = 724/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||||||| || ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 371 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 430 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| || ||||| | | ||| |||||||| || | | ||| | ||| Sbjct 431 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 490 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || |||||||| ||||| || || | || |||||||||||| ||| || | | Sbjct 491 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 550 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||||| ||| || | || || ||||||| ||| ||||||||||||||| ||| | Sbjct 551 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 610 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 611 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 670 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 671 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 730 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAA--GACTTCCATGCATAGCAGCGAACAAAGCTC 5603 ||||| | || | ||| || || | ||| |||||||||||| ||| | | | Sbjct 731 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAC--CCATGCATAGCACTGAATAGGGAGC 788 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663 | |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || | Sbjct 789 CGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 848 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGA 5723 | |||||||| | ||| ||||| |||||||| ||||| || || |||||||| ||| | Sbjct 849 CTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAAA 908 Query 5724 AACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCT 5782 | ||||| || || | || |||| || || || | |||| || || ||||| || ||| Sbjct 909 AGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCT 967 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 |||||||| || |||||| || ||||| || | | | ||||||||||||| | || Sbjct 968 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1027 Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 |||| ||| || | ||||| | |||||| | || | |||| || || || || Sbjct 1028 CCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1087 Query 5903 TTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||||| | ||||||||| | || |||||||| || || || ||||| || || || Sbjct 1088 TTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATA 1147 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 || ||| | || | || ||| || || || || ||||||||||| |||| |||||| Sbjct 1148 GCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCA 1207 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082 | || |||||||| || || || || || ||||| |||||||| | ||| || | ||| Sbjct 1208 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATA 1267 Query 6083 AATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAG 6142 ||| ||| ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1268 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1327 Query 6143 AGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | ||||| || | ||||| ||| || Sbjct 1328 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq5 Length=26133890 Score = 239 bits (264), Expect = 1e-58 Identities = 254/335 (76%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||||||| || ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 9071548 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 9071489 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| || ||||| | | ||| |||||| | || | | ||| | ||| Sbjct 9071488 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCA 9071429 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || |||||||| ||||| || || | || |||||||||||| ||| || | | Sbjct 9071428 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 9071369 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||||| ||| || | || || ||||||| ||| ||||| ||||||||| ||| | Sbjct 9071368 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAA 9071309 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 |||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 9071308 TTGTCGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 9071249 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 ||||| |||||||||||||| |||||| | || || Sbjct 9071248 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACC 9071214 >seq7 Length=17044513 Score = 190 bits (210), Expect = 6e-44 Identities = 362/543 (67%), Gaps = 45/543 (8%) Strand=Plus/Plus Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || || ||||||||||| ||||| || || |||||||| | ||| ||||| ||| |||| Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 5696 GAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAAT 5755 ||||| || || |||||||||||| || ||||| || || | || |||| ||||| Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 5756 ACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCC 5814 || | |||| || || ||||| | ||||||||||| || |||||| || ||||| || Sbjct 8090964 ACAGCAGTA-GCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACC 8091022 Query 5815 TAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTG 5874 | | | ||||||||||||| | || |||| ||| || ||||||| | ||| || Sbjct 8091023 CAGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTATACCAAGTAAGAACTG 8091082 Query 5875 GAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTC 5934 | || | |||| || || || ||||||| Sbjct 8091083 TAGAACAATTAGTTCATAAGGACCACCATTGT---------------------------- 8091114 Query 5935 CCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATAT 5994 ||| || || || || | ||| | || | || ||| || || || Sbjct 8091115 ---------------GTGCAAACCTATAGCTATAGAGGTAGGAATAATGGCACCAGAAAT 8091159 Query 5995 GATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGAC 6054 || ||||||| ||| |||| |||||| | || ||||||| || || || || || || Sbjct 8091160 AATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCTAC 8091219 Query 6055 TGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTAT 6114 ||| |||||| | | ||| || | |||||| || ||||||||| || | | || || Sbjct 8091220 TGGAGGTGCAACAATGAAAGCAATAATAAATACATAAGTTGCGGTCAATAAAGTAGGGAT 8091279 Query 6115 CATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACA 6174 ||| || ||||||||||| || | || || |||| | |||||||| | ||||| ||| Sbjct 8091280 CATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTTACA 8091339 Query 6175 GAA 6177 || Sbjct 8091340 AAA 8091342 Score = 111 bits (122), Expect = 5e-20 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 5642 TGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 5701 ||||||||||| ||||| || || |||||||| | ||| ||||| ||| |||| ||||| Sbjct 8087073 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCGGAGATT 8087132 Query 5702 CCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-A 5760 || || |||||||||||| || ||||| || || | || |||| || || || | | Sbjct 8087133 CCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCA 8087192 Query 5761 GTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 ||| || || ||||| || ||||||||||| Sbjct 8087193 GTA-GCAGCTGCAACAGGAGCTGAATATGC 8087221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152634801002904