Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq8164 535 1e-147 seq5 208 2e-49 seq7 161 3e-35 >seq8164 Length=157712 Score = 535 bits (592), Expect = 1e-147 Identities = 722/999 (72%), Gaps = 14/999 (1%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| || |||||||| || || || ||||| ||||||||||||||||| Sbjct 371 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 430 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || || ||||||| ||| ||||||||||| | || | || | |||| Sbjct 431 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 490 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || |||||||| ||||| || || | || |||||||||||| || || | | Sbjct 491 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 550 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 ||||||| ||| || | || ||||||||||| ||||||||||||||| ||| | Sbjct 551 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 610 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 611 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 670 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 671 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 730 Query 25804 GTTTCACGAAT--AAGT-GAGGAAGTAACAAG-ACTTCCGTGCATAGCAGCGAATAAAGC 25859 ||||| | || || | |||| || |||| || || ||||||||| ||||| | Sbjct 731 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAC--CCATGCATAGCACTGAATAGGGA 786 Query 25860 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 25919 || |||||||| || || || || | ||| || || || ||||||||||| ||||| || Sbjct 787 GCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 846 Query 25920 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 25979 || || || |||| ||| || |||||||| || || || || || |||||||| ||||| Sbjct 847 AGCTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGA 906 Query 25980 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 26039 || || ||||| |||| || || | ||||| |||||| || ||||||||||| || Sbjct 907 AAAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 966 Query 26040 TGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCG 26099 |||||| || ||| ||||| || | ||| || || | ||||||||||||| | || Sbjct 967 TGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 1026 Query 26100 TCCCA---AGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 |||| || ||||| | || | | ||||| | ||||| |||| ||| || || Sbjct 1027 ACCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACC 1083 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 |||||| || ||||| || || | || || |||||||| || ||||| ||||| | ||| Sbjct 1084 ACCGTTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACC 1143 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || || || || || ||||||||||| ||||| | Sbjct 1144 TATAGCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGA 1203 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct 1204 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAAT 1263 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | |||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 1264 AATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 1323 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||||| ||| || Sbjct 1324 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq5 Length=26133890 Score = 208 bits (230), Expect = 2e-49 Identities = 247/335 (74%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| || |||||||| || || || ||||| ||||||||||||||||| Sbjct 9071548 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 9071489 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || || ||||||| ||| ||||||||| | | || | || | |||| Sbjct 9071488 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCA 9071429 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || |||||||| ||||| || || | || |||||||||||| || || | | Sbjct 9071428 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 9071369 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 ||||||| ||| || | || ||||||||||| ||||| ||||||||| ||| | Sbjct 9071368 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAA 9071309 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || | || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 9071308 TTGTCGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 9071249 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 25778 ||||| || ||||| ||||| |||||| | || || Sbjct 9071248 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACC 9071214 >seq7 Length=17044513 Score = 161 bits (178), Expect = 3e-35 Identities = 357/545 (66%), Gaps = 49/545 (9%) Strand=Plus/Plus Query 25894 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCT 25953 || || ||||||||||| ||||| || || || || |||| ||| || |||||| | || Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 25954 GAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAAT 26013 || || || || |||||||||||||| || || ||||| |||| || || | || || Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 26014 ACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCT 26073 |||||| || ||||||||| | |||||||| || ||| ||||| || | ||| || Sbjct 8090964 ACAGCAGTAGCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCC 8091023 Query 26074 AGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGATGAGAAAG 26130 || | ||||||||||||| | || |||| || ||||| || || | | || Sbjct 8091024 AGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT---ATACCAAGTAAGAAC 8091080 Query 26131 TGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCT 26190 || | ||||| |||| ||| || ||||| Sbjct 8091081 TGTAGAACAATTAGTTCATAAGGACCACC------------------------------- 8091109 Query 26191 TCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAG 26250 |||| ||| | ||| || || |||| | || | || || || || Sbjct 8091110 ------ATTG------TGTGCAAACCTATAGCTATAGAGGTAGGAATAATGGCACCAGAA 8091157 Query 26251 ATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCC 26310 || || ||||||| ||| ||||| | ||| || ||| | |||||||||||||| ||||| Sbjct 8091158 ATAATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCT 8091217 Query 26311 ACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGG 26370 || ||||| ||| ||| || ||||| | |||| | ||| || || | | |||| Sbjct 8091218 ACTGGAGGTGCAACAATGAAAGCAATAATAAATACATAAGTTGCGGTCAATAAAGTAGGG 8091277 Query 26371 ATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCA 26430 ||||| | || |||||||| || | || || |||| | || || || | ||||| | Sbjct 8091278 ATCATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTTA 8091337 Query 26431 CATAA 26435 || || Sbjct 8091338 CAAAA 8091342 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25900 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 25959 ||||||||||| ||||| || || || || |||| ||| || |||||| | || || || Sbjct 8087073 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCGGAGATT 8087132 Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || || |||||||||||||| || || ||||| |||| || || | ||||| |||||| Sbjct 8087133 CCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCA 8087192 Query 26020 AATGCTGCTGCAACAGGGGCTGAATAAGC 26048 || ||||||||||| |||||||| || Sbjct 8087193 GTAGCAGCTGCAACAGGAGCTGAATATGC 8087221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151978864600464