Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq960 105 5e-18 seq15 105 5e-18 seq12 93.3 3e-14 seq2 87.8 1e-12 seq3 84.2 2e-11 >seq960 Length=1739 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||| | ||| | | |||| |||| ||||||||||||||| Sbjct 1218 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 1277 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | || || |||| |||| |||||||||||| |||||| ||| ||| Sbjct 1278 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCTTTCACATT 1337 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || ||||| || || || | || || || Sbjct 1338 ATCAATGGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCAC 1397 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 1398 AAAGATCTGCATC 1410 >seq15 Length=715379 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||| | ||| | | |||| |||| ||||||||||||||| Sbjct 589303 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 589362 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | || || |||| |||| |||||||||||| |||||| ||| ||| Sbjct 589363 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCTTTCACATT 589422 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || ||||| || || || | || || || Sbjct 589423 ATCAATGGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCAC 589482 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 589483 AAAGATCTGCATC 589495 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTT 48605 || || | |||||| || || ||| ||| |||||||| ||||| |||| || ||| Sbjct 547981 AGTCGAAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTT 547922 Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665 | ||| ||| | |||||| || ||||| |||| | ||| || || | ||||| ||| Sbjct 547921 CCATCCTCG---AGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCC 547865 Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 |||||||| || || || ||| | | | || || || ||||| |||| Sbjct 547864 TCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCAGAGCTTTCCACTTCCAGA 547805 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 547804 GTAATGGTTTTCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||| | ||| | | | || || | ||||||||||||||| Sbjct 548183 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAA 548124 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| || || | |||| |||||||||||| |||||| || ||| Sbjct 548123 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 548064 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || || || || || |||| ||| || || Sbjct 548063 ATCAATTGTATCCGAACTCTCCACCTCCAATGTTATGGTCTTGCCAGTCAGAGTCTTCAC 548004 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 548003 AAAGATCTGCATC 547991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || || || ||||| || | || | || Sbjct 590189 AGTCGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 590248 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| | ||| || |||| ||||| |||||| Sbjct 590249 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCC 590308 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || || ||| ||||| | || Sbjct 590309 TTGTCTTGGATCTTGGCTTTGACATTGTCGATCGTGTCAGAGCTCTCAACCTCGAGGGTG 590368 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||||| ||||| ||||||||| Sbjct 590369 ATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCATC 590407 >seq12 Length=1121147 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||| || ||||| ||||| | || | ||| | || || | ||| Sbjct 23792 ATGGAGAGTGGACTCTTTCTGGATATTATAATCTGCAAGGGTACGACCATCCTCAAGCTG 23851 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 || || ||||| |||| | ||| || |||| ||||| | ||||||||||| ||||| Sbjct 23852 TTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATC-CCCTCCTTGTCTTGAATCT 23910 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||| ||| | | || || || ||| ||||||| ||||| || || || | Sbjct 23911 TAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGAGTAATGGTCTTCCCAG 23970 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||||||||| Sbjct 23971 TCAGGGTCTTCACAAAAATCTGCAT 23995 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || | || ||| ||||| || |||||||| | Sbjct 24225 CCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 24284 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | |||| ||||| ||||||||||| || || || | ||| ||||| | ||| Sbjct 24285 AGGGTCCTACCGTCCTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 24344 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | | || || ||| ||| Sbjct 24345 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCAACC 24404 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 24405 TCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 24451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||| ||| || || |||||| || || |||||||| | ||| | | Sbjct 24006 AGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCCAGAGTCCTT 24065 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| ||||| | ||| ||||| | |||| ||| ||| Sbjct 24066 CCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCC 24125 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||| ||||||| || Sbjct 24126 TTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCGACCTCCAAAGTT 24185 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || ||||||||||| Sbjct 24186 ATTGTCTTCCCTGTGAGGGTCTTCACGAAAATCTGCAT 24223 >seq2 Length=42086771 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||| | ||| |||| |||| || | |||||| ||||| || Sbjct 18566658 TCCTTCTGGATGTTGTAATCTGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 18566599 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| || || | ||||| |||||||||||| ||||| || ||| Sbjct 18566598 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 18566539 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||| | ||||| || || ||||| | ||||| || Sbjct 18566538 TCAATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 18566479 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 18566478 AAGATCTGCAT 18566468 >seq3 Length=24358521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||| | || || || ||| || ||||||||||| |||| Sbjct 750009 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAGCC 749950 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGG 48658 | | | || |||| |||| |||||| || ||||| |||| | ||| || || | |||| Sbjct 749949 AAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGTGGG 749890 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||||||||| ||||| || ||| | | | || || ||| || Sbjct 749889 ATC-CCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCCGAGCTCTCGAC 749831 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| |||| || || || || |||||||| Sbjct 749830 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 749783 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| |||||| ||| || || || ||||| |||| || | || Sbjct 747788 AGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGG 747729 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| | || || || | || | |||||| Sbjct 747728 CCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCC 747669 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||||| || Sbjct 747668 TTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGAGTG 747609 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||| || || |||||||||||||| Sbjct 747608 ATGGTCTTTCCCGTCAGGGTCTTGACAAAAATCTGCAT 747571 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| |||||| ||| || || || ||||| |||| || | || Sbjct 749772 AGACGAAGCACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGG 749713 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| | || || || | || | |||||| Sbjct 749712 CCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCC 749653 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||||| || Sbjct 749652 TTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGAGTG 749593 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||| || || |||||||||||||| Sbjct 749592 ATGGTCTTTCCCGTCAGGGTCTTGACAAAAATCTGCAT 749555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380899697184972