Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq8164 556 1e-153 seq5 215 6e-51 seq7 149 7e-31 >seq8164 Length=157712 Score = 556 bits (616), Expect = 1e-153 Identities = 719/991 (73%), Gaps = 4/991 (0%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 1359 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1300 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| || | | ||| | || || || ||||| |||||||| ||||||||| Sbjct 1299 ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCA 1240 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || | || ||||| ||||| || Sbjct 1239 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACAATATT 1180 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| || ||||| ||| | ||||| || || || ||| Sbjct 1179 ATTTCTGGTGCCATTATTCCTACCTCTGCAGCTATAGGTTTGCACTTTTACCCGATATGG 1120 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| || | ||||||| ||||| || || ||||| |||| |||| | || | Sbjct 1119 GAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 1060 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 1059 CACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1000 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| ||||||||| || || || || | || || ||||| Sbjct 999 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 940 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| | ||||| | |||||||| || ||||||| ||||| || || || || Sbjct 939 TTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAATCTCC 880 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| |||| | || |||||||| |||||||||||||| |||||||| || Sbjct 879 GGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTT 820 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||||| || || Sbjct 819 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTCC 760 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || || ||| | | ||||| ||||| || || | || || || | ||||| Sbjct 759 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 700 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| || || || || || || |||||||| || ||||| || Sbjct 699 AGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGA 640 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| ||||||||| || ||||| | || |||||||| ||||| Sbjct 639 TTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCT 580 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | |||||||| || || | ||| | |||||||| |||||| | Sbjct 579 TGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTA 520 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTG--ACGCAGGTGGTAAAGTGATTCCTACTT 163399 || ||||| || ||||| ||||| || |||| | ||| ||| || ||| ||||| Sbjct 519 AATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAG--GGTCGTGTAATTAATACTT 462 Query 163400 GGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTC 163459 |||| ||||| ||||| | || |||||||||||||||||||| || |||||||||| Sbjct 461 GGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 402 Query 163460 ACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 | || ||||| || || || ||||||| ||| Sbjct 401 ATAATTTCCCTCTAGATCTAGCTGCTGTTGA 371 >seq5 Length=26133890 Score = 215 bits (238), Expect = 6e-51 Identities = 251/337 (74%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||| ||||| || || || || || || |||||||| || ||| Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| |||| |||| || ||||| | || || ||||| Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 ||||| | ||||| || | |||||||| || || | ||| | |||||||| ||| Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 9071393 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG--ACGCAGGTGGTAAAGTGATTC 163393 ||| | || ||||| || ||||| ||||| || |||| | ||| ||| || ||| Sbjct 9071394 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAG--GGTCGTGTAATTA 9071451 Query 163394 CTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTA 163453 || |||||| ||||| ||||| | || |||||||||||||||||||| || |||| Sbjct 9071452 ATAATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 9071511 Query 163454 ATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||| || ||||| || || || ||||||| ||| Sbjct 9071512 ATGCTCATAATTTCCCTCTAGATCTAGCTGCTGTTGA 9071548 >seq7 Length=17044513 Score = 149 bits (164), Expect = 7e-31 Identities = 329/503 (65%), Gaps = 49/503 (10%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATC 162597 || ||||| ||||| |||||||||||| ||| | | | ||||||| || || Sbjct 8091300 GGATGGTTTGGTGTTTTGATGATCCCTA-CTTTATTGA--CCGCAACTTATGTATTTATT 8091244 Query 162598 ATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGT 162657 ||||| ||||||| ||||||||||| ||||| |||||||| | |||| |||| | || Sbjct 8091243 ATTGCTTTCATTGTTGCACCTCCAGTAGATATTGATGGTATTCGTGAACATGTTTCTGGA 8091184 Query 162658 TCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATT 162717 || | || ||| | ||||| || || |||||||| | |||||| || | ||||| Sbjct 8091183 TCTTTACTTTATAGAAACAATATTATTTCTGGTGCCATTATTCCTACCTCTATAGCTATA 8091124 Query 162718 GGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGT 162777 ||| | ||| | |||||| Sbjct 8091123 GGTTTGCAC-------------------------------------------ACAATGGT 8091107 Query 162778 GGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGT 162837 || |||| |||| | || | || ||| | | || || | ||| |||||| Sbjct 8091106 GGTCCTTATGAACTAATTGTTCTACAGTTCTTACTTGGTATAGCTTGCTACATGGGTCGT 8091047 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 ||||||||||| || ||| | |||||||| |||||||| ||||||||| || || Sbjct 8091046 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 8090987 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 | || | || || ||||| || ||| | ||||| | |||||||| || ||| Sbjct 8090986 CATGTTGCAGCTGCTACTGCTGTTTTTTTGATATATCCAATTGGTCAAGGAAGCTTTTCT 8090927 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 || | ||||| || || || || |||| ||| |||| |||| | || |||||||| ||| Sbjct 8090926 GATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGTATTCCAAGCTGAG 8090867 Query 163018 CACAACATCCTAATGCACCCCTT 163040 ||||||||||| |||||||| || Sbjct 8090866 CACAACATCCTTATGCACCCATT 8090844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 162885 TGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCA 162944 |||||| || || || || | || || ||||| |||||| | ||||| | ||||| Sbjct 8087222 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTGGTCA 8087163 Query 162945 AGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGT 163004 ||| || ||||| | ||||| || || || || |||| ||| |||| |||| | || Sbjct 8087162 AGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGT 8087103 Query 163005 GTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 |||||||| |||||||||||||| |||||| Sbjct 8087102 ATTCCAAGCTGAGCACAACATCCTTATGCAC 8087072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553028357696160