Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 140 6e-28 >seq4 Length=23934096 Score = 140 bits (154), Expect = 6e-28 Identities = 378/574 (66%), Gaps = 7/574 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || ||||| | |||||| || || || | ||| | | |||| ||| Sbjct 23380662 TACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAG 23380721 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || ||||| | ||| | || || ||||| || || || ||| || Sbjct 23380722 AACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCC 23380781 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || ||||| || || || || || ||| | || || ||| Sbjct 23380782 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGA----TTC 23380837 Query 48302 TTGTCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | | ||||||| || ||||| | |||||||| ||| ||| || || || || Sbjct 23380838 TGAGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATC 23380897 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 || || | || ||| | || ||| | | |||| | ||||| || || Sbjct 23380898 GATCGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAG 23380957 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 ||||||||| ||||| | ||||| || ||||||||||| ||||||||||| | || Sbjct 23380958 GCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGC 23381017 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCAT 48539 ||| | ||||| ||||| | ||| || ||| || |||||||| || || || | Sbjct 23381018 CTCGGAGACCTGGACTTCCTTCATGAACCT-TCCGGCGAGATTCTCCAAAACGATGCCGT 23381076 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | || ||||| |||||||| || || || | | ||| || |||| |||| |||| Sbjct 23381077 CAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAG 23381136 Query 48600 CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 | ||| ||| ||| | || || || || || || | ||||||||||| || Sbjct 23381137 TTTCCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCT 23381196 Query 48660 GTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || || |||||||| |||| || ||||| || Sbjct 23381197 CGGCCTTCTTGTACATCTCCCAGATTTCCGGGTA 23381230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931437737077760