Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq960 89.7 4e-13 seq15 89.7 4e-13 >seq5 Length=26133890 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | | || || || || || || ||| ||| Sbjct 18099371 ATGCAAATATTTGTTAAGACGCTGGCCGGAAAGACTATCACTCTTGAGGTGGAGGGTTCG 18099430 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| ||| || |||||||||||| | || ||| || Sbjct 18099431 GATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGAACAG 18099490 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || || || ||||||||| || ||| |||| ||||||||| Sbjct 18099491 CAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGCTGATTATAAC 18099550 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||||||| ||||| | || | |||| || || ||||| Sbjct 18099551 ATTCAGAAGGAATCTACTTTGCACCTTGTTCTTTGATTGCGGGGTGGGAT 18099600 >seq960 Length=1739 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || || || ||||| ||| |||| ||| Sbjct 1637 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCA 1578 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| ||||| ||||| | || ||| || Sbjct 1577 GATACTATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 1518 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||| || |||| ||| | || | ||||| || ||| Sbjct 1517 CAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAAC 1458 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || || |||||| |||| Sbjct 1457 ATTCAAAAGGAGTCGACCCTGCACTTGGT 1429 >seq15 Length=715379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || || || ||||| ||| |||| ||| Sbjct 589722 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCA 589663 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| ||||| ||||| | || ||| || Sbjct 589662 GATACTATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 589603 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||| || |||| ||| | || | ||||| || ||| Sbjct 589602 CAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAAC 589543 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || || |||||| |||| Sbjct 589542 ATTCAAAAGGAGTCGACCCTGCACTTGGT 589514 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || || ||||||||||| ||| |||| || Sbjct 547764 ATGCAGATCTTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 547823 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| ||||| ||||| | ||| ||| || Sbjct 547824 GATACTATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 547883 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || || | || ||| | || | || || || ||| Sbjct 547884 CAGAGGTTGATCTTTGCAGGAAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTACAAC 547943 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || ||||| ||| |||| | || | || || ||||| Sbjct 547944 ATTCAAAAGGAGTCCACTCTTCACTTGGTGCTTCGACTGCGTGGTGGGAT 547993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425362472754156