Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq8164 549 6e-152 seq7 199 1e-46 seq5 181 3e-41 >seq8164 Length=157712 Score = 549 bits (608), Expect = 6e-152 Identities = 725/993 (73%), Gaps = 18/993 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 379 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 438 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | || | | | ||||| Sbjct 439 AGCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCAACTACA-- 496 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||| ||||| || || ||||| | || |||||||||||| ||| || | || ||| Sbjct 497 -GATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 555 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||||||||| | ||||||||||| | | |||||| Sbjct 556 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTT 615 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 616 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 675 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 676 GGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 735 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAG-ACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 || || || | |||| || |||| || || ||||||||| ||||| | || | Sbjct 736 CCTGATCAAACTAGAGGT--TACCAAGGAC--CCATGCATAGCACTGAATAGGGAGCCGC 791 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 ||||||| || || || || | ||| || || || ||||||||||| ||||| || |||| Sbjct 792 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTT 851 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAAC 18366 ||||||| | |||||| |||||||||||| || || || |||||||| ||||| || | Sbjct 852 GGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAAAAGC 911 Query 18367 TCCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGA 18424 | ||||| |||| ||||| | | ||||| || | || | |||||||| || || || || Sbjct 912 TTCCTTGACCAATTGGATATATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGA 969 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| ||||||||||| || | ||||||||||||| | || || Sbjct 970 ATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1029 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 |||||| || | || | | ||||| | ||||| |||| ||| || || ||||| Sbjct 1030 CATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 1089 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || || |||||||| || ||||| ||||| | ||| || || Sbjct 1090 GTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATAGC 1149 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || ||||||||||| ||||| | ||| || Sbjct 1150 TGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCAGA 1209 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 ||||| |||||||||||||| || || || ||||| ||||||| || ||||| | ||| Sbjct 1210 AACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATAAA 1269 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 1270 TACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1329 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| | || || || | ||||| ||| || Sbjct 1330 ACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq7 Length=17044513 Score = 199 bits (220), Expect = 1e-46 Identities = 366/543 (67%), Gaps = 45/543 (8%) Strand=Plus/Plus Query 18276 AACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCG 18335 || || ||||||||||| ||||| || ||||||||||| | |||||| |||||| ||||| Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 18336 CTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAAT 18395 || || || |||||||||||||| || || ||||| |||| ||||| | | ||| Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 18396 ACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACC 18454 || | || | |||||||| || | || ||||| |||||| |||||| ||||||||||| Sbjct 8090964 ACAGCAGTA-GCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACC 8091022 Query 18455 TAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTG 18514 || | ||||||||||||| | || |||||||| || || || | | || || Sbjct 8091023 CAGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTATACCAAGTAAGAACTG 8091082 Query 18515 GAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTC 18574 | ||||| |||| ||| || || |||| ||| Sbjct 8091083 TAGAACAATTAGTTCATAAGGACC-----------ACCA-----------TTG------- 8091113 Query 18575 CCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATAT 18634 ||| | ||| || || |||| | || | || || || || || Sbjct 8091114 --------------TGTGCAAACCTATAGCTATAGAGGTAGGAATAATGGCACCAGAAAT 8091159 Query 18635 GATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAAC 18694 || ||||||| ||| ||||| | ||| || ||| | |||||||||||||| || || || Sbjct 8091160 AATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCTAC 8091219 Query 18695 GGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGAT 18754 ||||| ||| ||| || ||||| | |||| | || |||||| || | | |||||| Sbjct 8091220 TGGAGGTGCAACAATGAAAGCAATAATAAATACATAAGTTGCGGTCAATAAAGTAGGGAT 8091279 Query 18755 CATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACA 18814 ||| | || |||||||| || | ||| || |||| | || || || | ||||| ||| Sbjct 8091280 CATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTTACA 8091339 Query 18815 TAA 18817 || Sbjct 8091340 AAA 8091342 Score = 116 bits (128), Expect = 1e-21 Identities = 120/152 (79%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 ||||||||||| ||||| || ||||||||||| | |||||| |||||| ||||| || Sbjct 8087073 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCGGAGATT 8087132 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG- 18399 || || |||||||||||||| || || ||||| |||| ||||| | | ||||| || | Sbjct 8087133 CCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGAAA-ACAGC 8087191 Query 18400 AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 || | |||||||| || || || ||||| ||| Sbjct 8087192 AGTA-GCAGCTGCAACAGGAGCTGAATATGCA 8087222 >seq5 Length=26133890 Score = 181 bits (200), Expect = 3e-41 Identities = 239/330 (72%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 9071540 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 9071481 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| || | || | || | | | ||||| Sbjct 9071480 AGCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCAACTACA-- 9071423 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||| ||||| || || ||||| | || |||||||||||| ||| || | || ||| Sbjct 9071422 -GATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 9071364 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||||||||| | ||| ||||||| | | ||||| Sbjct 9071363 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAATTGTC 9071304 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 9071303 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 9071244 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCC 18160 || ||||| ||||| || ||| | || || Sbjct 9071243 GGTTTCTTCCTCTTGACCGAATCTGTAACC 9071214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151303730059416