Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq8164 511 1e-140 seq5 217 4e-52 seq7 158 4e-34 >seq8164 Length=157712 Score = 511 bits (566), Expect = 1e-140 Identities = 710/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || ||||| || || || || || |||||||| || || | |||||||| Sbjct 380 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 439 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| |||||||| || || || || | || | | | | | | |||| Sbjct 440 GCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCAACTACAGAT 499 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAA 21648 || || || || |||||||| |||||||||||||| || || || ||||| | || Sbjct 500 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG--GTAA 557 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 |||| |||||||| |||||||| ||||| || |||||||| | | ||| ||||| || | Sbjct 558 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGA 617 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | ||||||||||||||||| | || |||||||| || ||||| || || ||||| || | Sbjct 618 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGG 677 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC 21828 | |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 678 TTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 737 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || | || || |||| | || ||||||||| ||| | || || |||| Sbjct 738 TGATCAAACTAGAGGTTACCAAGGACCCATGCATAGCACTGAATAGGGAGCCGCCGAATA 797 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || || || || | ||||||||| || |||||||| || ||||||||||| ||||| | Sbjct 798 CACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATA 857 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | |||| ||||||| || ||||| || || | ||||||| | |||||||| || | Sbjct 858 CAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAAAAGCTTCCTT 917 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| ||||| | | ||| |||||||| ||||| || |||||||| || || |||| Sbjct 918 GACCAATTGGATATATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 977 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAG 22128 || ||||| || | ||| || || || | |||||||||||||| || ||||||| || Sbjct 978 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT-AG 1036 Query 22129 CAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 ||| || |||| | |||||| | || | |||| | ||||| |||||||| | | Sbjct 1037 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAAC 1096 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG 22247 |||||||||| | ||| |||||||| || ||||| ||||| | || || || | | Sbjct 1097 CATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATAGCTGCAGAG 1156 Query 22248 CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGT 22307 | |||| | ||| || || || || ||||| ||||| | | || |||| || ||| Sbjct 1157 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCAGAAACAGGT 1216 Query 22308 TCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTT 22367 || || || ||||| || || || || ||||| ||| || || |||||||| || Sbjct 1217 TCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAA 1276 Query 22368 GTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || |||| ||| | | | || ||||| | || || |||||||| | ||||||||||| Sbjct 1277 GTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1335 Query 22427 ATTAGTAGAGGTGACCCAGGAACAAAA 22453 | ||| ||| | |||| |||||| Sbjct 1336 TTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq5 Length=26133890 Score = 217 bits (240), Expect = 4e-52 Identities = 246/328 (75%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || ||||| || || || || || |||||||| || || | |||||||| Sbjct 9071539 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 9071480 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| |||||||| | || || || | || | | | | | | |||| Sbjct 9071479 GCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCAACTACAGAT 9071420 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAA 21648 || || || || |||||||| |||||||||||||| || || || ||||| | || Sbjct 9071419 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG--GTAA 9071362 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 |||| |||||||| |||||||| ||||| || || ||||| | | ||| ||||| | | Sbjct 9071361 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAATTGTCGA 9071302 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | ||||||||||||||||| | || |||||||| || ||||| || || ||||| || | Sbjct 9071301 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGG 9071242 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACC 21796 | |||||||||||||| || ||||||| Sbjct 9071241 TTTCTTCCTCTTGACCGAATCTGTAACC 9071214 >seq7 Length=17044513 Score = 158 bits (174), Expect = 4e-34 Identities = 169/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 21910 GAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGC 21969 |||| || |||||||| || ||||||||||| ||||| || | |||| ||||||| | | Sbjct 8090842 GAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATAC 8090901 Query 21970 CGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGA 22029 |||| || || | ||||||| |||||||||| || || |||| ||||| | | | Sbjct 8090902 CGGAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAA 8090961 Query 22030 ACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCC 22089 | |||||||| ||||| || ||| |||| || || |||||| ||||| || | ||| | Sbjct 8090962 AAACAGCAGTAGCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATAC 8091021 Query 22090 CTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA 22131 | || || | |||||||||||||| || ||||||| ||||| Sbjct 8091022 CCAGACGGAAACTAAGTTCCCACTCACGACCCATGT-AGCAA 8091062 Score = 118 bits (130), Expect = 3e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 21910 GAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGC 21969 |||| | |||||||| || ||||||||||| ||||| || | |||| ||||||| | | Sbjct 8087065 GAAATGAGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATAC 8087124 Query 21970 CGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGA 22029 |||| || || | ||||||| |||||||||| || || |||| ||||| | | || Sbjct 8087125 CGGAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGA 8087184 Query 22030 ACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067 | |||||||| ||||| || |||||||| || || ||| Sbjct 8087185 AAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 8087222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146193825499920