Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 seq2 107 2e-18 seq6 98.7 1e-15 >seq4 Length=23934096 Score = 109 bits (120), Expect = 7e-19 Identities = 303/462 (66%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | ||||| | || ||| ||| ||||||| || | || Sbjct 8568334 TGATGTTGCTGGGGTAGATGAAGCCAAGCAGGATTTTGTGGAGGTTGTGGAATTCTTGAA 8568275 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || ||||| | || ||| || || || ||| | ||||| | || Sbjct 8568274 GAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGAATTCCTAAAGGGGTTCTTCTTGTTGG 8568215 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || |||||||| || | || || || || |||||| | ||| || Sbjct 8568214 TCCTCCAGGAACTGGAAAGACTCTGTTAGCAAAGGCAATTGCTGGTGAAGCTGGTGTTCC 8568155 Query 175371 ATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAG 175430 ||| || ||| | | | ||||| || |||||||||||||| ||||| | Sbjct 8568154 ATTTTTCTCCATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCCCG 8568095 Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 ||||| ||||| ||| | | ||| || ||| ||| || ||||| || ||||||| Sbjct 8568094 AGTTCGTGATCTTTTTAAGAAGGCCAAAGAGAATGCACCTTGCATTGTATTTGTTGATGA 8568035 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAG 175547 |||||||| || || |||| | | |||| |||| | | |||||| || || Sbjct 8568034 AATTGATGCTGTTGGACGGCAAAGAGGAACTGGAATTGGTGGG---GGAAATGATGAAAG 8567978 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG--- 175604 ||||||||| ||||||| || | || || |||||||| ||||| | ||||| Sbjct 8567977 AGAACAAACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGCAACACTGGTAT 8567918 Query 175605 CATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 |||||||| |||| || ||||| | | || || ||||| Sbjct 8567917 CATTGTGG---TTGCAGCGACTAACAGGGCAGACATTCTTGA 8567879 >seq2 Length=42086771 Score = 107 bits (118), Expect = 2e-18 Identities = 218/319 (68%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||| ||||| ||||| |||| ||| | | |||| || ||||| || |||||||| Sbjct 14879720 TGGAGCCAAAATCCCAAAAGGCTGTCTTTTGGTGGGTCCACCTGGTACCGGCAAGACCCT 14879661 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAA 175394 || || || ||| | || || || | || || || || ||| | || || | Sbjct 14879660 TCTGGCTCGGGCCGTGGCCGGCGAGGCTGGGGTGCCGTTTTTCTCTTGCGCAGCTTCAGA 14879601 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || ||||| ||||||| || |||||||| || || || || | || || | || Sbjct 14879600 GTTCGTGGAATTGTTTGTGGGAGTGGGTGCGTCGAGAGTGCGGGACTTGTTCGAGAAGGC 14879541 Query 175455 CC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | | ||| | || || ||||| |||||||||||||||||||||||||| | ||| Sbjct 14879540 CAAGTCGAAAGCG-CCGTGCATTGTGTTCATTGATGAGATTGATGCGGTGGGGAGGCAGA 14879482 Query 175514 GCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | || || ||| | | | ||||| ||||| || || || |||||||| || | Sbjct 14879481 GAGGAGCAGGTATGGGAGG--TGGGAATGATGAGAGGGAGCAGACCATTAATCAGCTGTT 14879424 Query 175572 CACCGAGATGGATGGCTTT 175590 || ||||||||||||||| Sbjct 14879423 GACGGAGATGGATGGCTTT 14879405 >seq6 Length=21292200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||||| ||||||| | ||| |||||||| ||||| |||| || |||||| ||||||| Sbjct 18346924 AGGATTCTTGTAATAGGAAAAGTAACCAGCAGAATCTGGGTACCATCAAGTCTTCAAATC 18346865 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 ||||||| |||||| | |||| |||| | || || || ||||| |||||||||| Sbjct 18346864 TTTGCACTGAAATTATTGAGTTCACAAGTCCAACAGAAACTGCAGTTTGTAATTTGGCAT 18346805 Query 76053 CAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 | || || | || |||||||| ||| || Sbjct 18346804 CCATTGCATTACCCCGATATGTCAAGGAAAAG 18346773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596508720072320