Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq8164 502 3e-137 seq5 174 2e-38 seq7 129 7e-25 >seq8164 Length=157712 Score = 502 bits (556), Expect = 3e-137 Identities = 711/995 (71%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| |||| ||||| || || ||||| | ||||||||||||||||||| Sbjct 371 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 430 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| ||| ||| | ||| | | || Sbjct 431 CCAAGGTTAGCGCGGTTAATAATA--TCAGCCCAAGTATTAATTACACGACCCTGACTAT 488 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || ||||| || || ||||| || || | ||| || ||||| |||| ||||| | Sbjct 489 CAACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTA 548 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 || || ||||| | || ||| || || | | ||| |||||||| || | | | | Sbjct 549 AAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAG 608 Query 8120 TGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 ||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || || Sbjct 609 AATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 667 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 ||||||||||| ||||| |||||||| || | ||||| | || ||| || | ||| Sbjct 668 ATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 727 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 || || || ||||| | | ||| || || || || || |||||||||||||| || || Sbjct 728 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGACCCATGCATAGCACTGAATAGGGAG 787 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| Sbjct 788 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 847 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 ||||||||||| | ||||||||| || ||||| || || ||||| ||||| || ||||| Sbjct 848 GCTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAA 907 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||||| |||||||| ||||| || || |||||| | || ||||| Sbjct 908 AAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 967 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538 |||||| ||| ||||| || | |||||| | ||| | | ||||||| | | Sbjct 968 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1027 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 |||||||| || | |||| | |||||| | | || | | ||| ||||| ||| Sbjct 1028 CCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1087 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || || ||||| ||||| | | || |||||||| || || || ||||| || || ||| Sbjct 1088 TTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATA 1147 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 || || | |||| | |||||||| || || ||||||||||| | || || || Sbjct 1148 GCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCA 1207 Query 8719 GCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATA 8778 | |||||||||||||||||| || ||||| || || || |||||||| || || | ||| Sbjct 1208 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATA 1267 Query 8779 AAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAA 8838 || || || || | || || ||| ||||| | ||| |||||||| || | ||| Sbjct 1268 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1327 Query 8839 AGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 || | ||| | || || || | ||| | ||||| Sbjct 1328 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq5 Length=26133890 Score = 174 bits (192), Expect = 2e-38 Identities = 244/338 (72%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| |||| ||||| || || ||||| | ||||||||||||||||||| Sbjct 9071548 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 9071489 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| || ||| | ||| | | || Sbjct 9071488 CCAAGGTTAGCGCGGTTAATAATA--TCAGCCCAATTATTAATTACACGACCCTGACTAT 9071431 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || ||||| || || ||||| || || | ||| || ||||| |||| ||||| | Sbjct 9071430 CAACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTA 9071371 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 || || ||||| | || ||| || || | | ||| ||||| || || | | | | Sbjct 9071370 AAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAG 9071311 Query 8120 TGTTGT-TAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 |||| |||| | ||||| |||||||| |||| ||||| || |||||||| || || Sbjct 9071310 AATTGTCGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 9071252 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 ||||||||||| ||||| |||||||| || | ||||| Sbjct 9071251 ATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACC 9071214 >seq7 Length=17044513 Score = 129 bits (142), Expect = 7e-25 Identities = 346/542 (64%), Gaps = 43/542 (8%) Strand=Plus/Plus Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCA 8391 || || |||||||| ||||| ||||| ||||||||||| | ||||||||| || |||| Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 8392 GAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAAC 8451 || || ||||| ||||| |||||||| || || ||||||| |||||||| || || Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 8452 ACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCT 8511 || || |||||| | || |||| |||||| ||| ||||| || | |||||| Sbjct 8090964 ACAGCAGTAGCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCC 8091023 Query 8512 AAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGG 8571 | ||| | | ||||||| | ||||||||| || || |||| | ||| || Sbjct 8091024 AGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTATACCAAGTAAGAACTGT 8091083 Query 8572 AAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCC 8631 | | || | | ||| ||||| || || | Sbjct 8091084 AGAACAATTAGTTCATAAGGACCACCATTGT----------------------------- 8091114 Query 8632 CAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATG 8691 ||| || || ||||| | || | |||| | |||||||| || Sbjct 8091115 --------------GTGCAAACCTATAGCTATAGAGGTAGGAATAATGGCACCAGAAATA 8091160 Query 8692 ATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACA 8751 || ||||||| ||| | || || || | |||| ||||||||||||| || ||||| || Sbjct 8091161 ATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCTACT 8091220 Query 8752 GGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATC 8811 || || ||| |||| || || | ||||| | || || | || || ||| ||| Sbjct 8091221 GGAGGTGCAACAATGAAAGCAATAATAAATACATAAGTTGCGGTCAATAAAGTAGGGATC 8091280 Query 8812 ATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAA 8871 || | ||| |||||||| || | ||||| ||| | || || || | ||| | ||| Sbjct 8091281 ATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTTACAA 8091340 Query 8872 AA 8873 || Sbjct 8091341 AA 8091342 Score = 118 bits (130), Expect = 1e-21 Identities = 121/157 (77%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 8331 GAAAGGA-TGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTAC 8389 |||| || |||||||| ||||| ||||| ||||||||||| | ||||||||| || ||| Sbjct 8087065 GAAATGAGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATAC 8087124 Query 8390 CAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGA 8449 | || || ||||| ||||| |||||||| || || ||||||| |||||||| |||| Sbjct 8087125 CGGAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGA 8087184 Query 8450 ACACTGCGAAAGCAGCAGATACTGGAGCACTATATGC 8486 | || || |||||| | || ||||| |||||| Sbjct 8087185 AAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 8087221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615799551242080