Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq8164 511 1e-140 seq5 217 4e-52 seq7 158 4e-34 >seq8164 Length=157712 Score = 511 bits (566), Expect = 1e-140 Identities = 710/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 1362 TTTTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1303 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | | | ||| |||| || || |||||||| || || ||| ||||| Sbjct 1302 ATGATCCC-TACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACC 1244 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || | | ||||| ||||| Sbjct 1243 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACAA 1184 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || ||| | |||| | | | || || || | ||||| ||||| || Sbjct 1183 TATTATTTCTGGTGCCATTATTCCTACCTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1124 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||| ||| | ||||||||||| | |||||||| ||||| | |||| | || Sbjct 1123 ATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 1064 Query 41533 ATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATC 41591 | |||||| | |||| || ||||| ||||||| || |||||||||||||| | | Sbjct 1063 TCTACACTTCTTACTTGGTGTAGCTTGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCC 1005 Query 41592 GACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTG 41651 | || || ||| | || ||||| |||||| || || |||||||| || ||||| |||| Sbjct 1004 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 945 Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711 |||| ||| | | ||||| |||| || || |||||||| | ||||||| | || | Sbjct 944 CTGTTTTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAA 885 Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771 | ||||| || ||||||| |||| | || ||||| ||||||||||| || |||||||| | Sbjct 884 TCTCCGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACC 825 Query 41772 CTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACG 41831 | ||||||||| | || || || || ||||| || || | ||| ||||||||| | Sbjct 824 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 765 Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATG 41891 | | |||| || || | || | || || || ||| | | || || | | Sbjct 764 GGTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 705 Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951 |||||| || |||||||||||||| || || ||||| || || ||||| || ||||||| Sbjct 704 GTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTG 645 Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011 | || | ||||||||||||||||| || || ||||| ||| | | |||||||| || | Sbjct 644 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAG 585 Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTC--TACCATGGCTTT 42069 |||| |||||||| |||||||| |||||| | ||||| || || || |||||||| Sbjct 584 CTGCTTGGCCTGTAGTAGGTATCTGGTTTAC--CGCTTTAGGTATCAGCACTATGGCTTT 527 Query 42070 CAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAA 42129 |||||| |||||||| || || || |||||| | | | | | | || | || || || Sbjct 526 CAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAA 467 Query 42130 CACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAA 42189 || |||||||| ||| ||||||| || |||||||| | || || |||||||| || || Sbjct 466 TACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 407 Query 42190 CGCACACAACTTCCCGCTTGACCTTGC 42216 || || || ||||| || || || || Sbjct 406 TGCTCATAATTTCCCTCTAGATCTAGC 380 >seq5 Length=26133890 Score = 217 bits (240), Expect = 4e-52 Identities = 246/328 (75%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||||||||| || || ||||| || || ||||| || |||||| Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| || | ||||| ||| | | ||||| || || Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTC--TACCATGGCTT 42068 ||||| |||||||| |||||||| |||||| | ||||| || || || ||||||| Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTAC--CGCTTTAGGTATCAGCACTATGGCTT 9071391 Query 42069 TCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCA 42128 ||||||| |||||||| || || || |||||| | | | | | | || | || || | Sbjct 9071392 TCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTA 9071451 Query 42129 ACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGA 42188 | | |||||||| ||| ||||||| || |||||||| | || || |||||||| || | Sbjct 9071452 ATAATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 9071511 Query 42189 ACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || || ||||| || || || || Sbjct 9071512 ATGCTCATAATTTCCCTCTAGATCTAGC 9071539 >seq7 Length=17044513 Score = 158 bits (174), Expect = 4e-34 Identities = 169/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 41556 TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCT 41615 ||||| ||||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 8091062 TTGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTG 8091004 Query 41616 TTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTG 41675 |||||| || || |||| ||| || ||||| |||||||| || | | ||||| ||| Sbjct 8091003 CTGTTGCATATTCAGCTCATGTTGCAGCTGCTACTGCTGTTTTTTTGATATATCCAATTG 8090944 Query 41676 GACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGC 41735 | || || |||||||||| ||||||| | || || ||||| | ||||||| |||| Sbjct 8090943 GTCAAGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGA 8090884 Query 41736 TGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTC 41777 | || ||||| ||||||||||| || |||||||| || |||| Sbjct 8090883 TTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTC 8090842 Score = 118 bits (130), Expect = 3e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| |||||||| ||| | | ||||| |||| || Sbjct 8087222 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTGGTCA 8087163 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||||||||| ||||||| | || || ||||| | ||||||| |||| | || Sbjct 8087162 AGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGT 8087103 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTC 41777 ||||| ||||||||||| || |||||||| | |||| Sbjct 8087102 ATTCCAAGCTGAGCACAACATCCTTATGCACTCATTTC 8087065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146200224879456