Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq8164 475 1e-129 seq5 188 2e-43 seq7 143 8e-30 >seq8164 Length=157712 Score = 475 bits (526), Expect = 1e-129 Identities = 703/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 380 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 439 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 440 GCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCAACTACAGAT 499 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 || || || ||||||||||||| ||| || ||||| |||| |||||| | || || | | Sbjct 500 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 559 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| || || ||| Sbjct 560 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 619 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 620 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGGTT 679 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 680 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 739 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 740 ATCAAACTAGAGGTTACCAAGGACCCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 799 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || ||||||||||| Sbjct 800 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 859 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| |||||||| ||||| || || ||||| || ||| ||| || ||||| Sbjct 860 ATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAAAAGCTTCCTTGA 919 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||| | ||||| || || ||| || | | || |||| |||||||||| Sbjct 920 CCAATTGGATATATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 979 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC 26535 ||||| || | ||| || || | | || |||||||||| | || ||| | || Sbjct 980 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC--CATGTAGC 1037 Query 26536 -TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| | | ||| |||| ||| || || || ||||||| || Sbjct 1038 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACC 1097 Query 26595 ACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 | || || | | | |||||||| ||||||||||| || | || || || ||||| Sbjct 1098 ATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATAGCTGCAGAGG 1157 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 || | | || || || || ||||||||||| || | ||| || || ||||| || | Sbjct 1158 TAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCAGAAACAGGTT 1217 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTA 26773 |||| || ||||| |||||||| || ||||| || ||||| |||| ||||| ||| | | Sbjct 1218 CACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAA 1276 Query 26774 GTGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 || || | | | ||| |||| ||||| | || || |||||||| | || |||||||| Sbjct 1277 GTTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1335 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | |||||| Sbjct 1336 TTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq5 Length=26133890 Score = 188 bits (208), Expect = 2e-43 Identities = 232/317 (73%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 9071539 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 9071480 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | ||| ||||| || Sbjct 9071479 GCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCAACTACAGAT 9071420 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 || || || ||||||||||||| ||| || ||||| |||| |||||| | || || | | Sbjct 9071419 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 9071360 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || || ||||| | |||||| || | ||| Sbjct 9071359 CAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAATTGTCGAAA 9071300 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 9071299 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGGTT 9071240 Query 26177 TCTTCATCTTGCCCAAA 26193 ||||| ||||| || || Sbjct 9071239 TCTTCCTCTTGACCGAA 9071223 >seq7 Length=17044513 Score = 143 bits (158), Expect = 8e-30 Identities = 359/546 (66%), Gaps = 51/546 (9%) Strand=Plus/Plus Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 ||||||||||| || || || || || ||||||||||| | ||| ||||| ||| |||| Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 ||||| || || ||||| |||||| ||| || ||||| || | ||||| | || || Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCT 26497 || || ||| || | | | |||| |||||||||| ||||| || | ||| || Sbjct 8090964 ACAGCAGTAGCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCC 8091023 Query 26498 AGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTCCTATTAAGAAGT 26555 || | | || |||||||||| | || ||| | || |||| || | |||||| | Sbjct 8091024 AGACGGAAACTAAGTTCCCACTCACGACC--CATGTAGCAAGCTATACCAAGTAAGAACT 8091081 Query 26556 GGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTT 26615 | | | ||| |||| ||| || || ||||| |||||| Sbjct 8091082 GTAGAACAATTAGTTCATAAGGACCACCATT-----------------GTGTGC------ 8091118 Query 26616 CCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATA 26675 ||| || || || |||||| || | | || || || | Sbjct 8091119 ------------AAA--------CCTATAGCTATAGAGGTAGGAATAATGGCACCAGAAA 8091158 Query 26676 TTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTA 26735 | |||||||||| || | ||| || || ||||| | ||||| || ||||| ||||||| Sbjct 8091159 TAATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCTA 8091218 Query 26736 CAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGG 26793 | || ||||| | ||||| |||| ||||| |||| ||| || | | | ||| |||| Sbjct 8091219 CTGGAGGTGCAACAATGAAAGCAATAATAAATACAT-AAGTTGCGGTCAATAAAGTAGGG 8091277 Query 26794 TATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTC 26853 ||||| | || || |||||||| | || ||| |||| ||||| || || | ||| | Sbjct 8091278 -ATCATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTT 8091336 Query 26854 ACAAAA 26859 |||||| Sbjct 8091337 ACAAAA 8091342 Score = 98.7 bits (108), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 |||| |||||| || || || || || ||||||||||| | ||| ||||| ||| |||| Sbjct 8087067 AATGAGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8087126 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 ||||| || || ||||| |||||| ||| || ||||| || | ||||| | ||||| Sbjct 8087127 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGAAA 8087186 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA-ACAAATA 26480 || || ||| || | | || |||| ||||||| | ||||| Sbjct 8087187 ACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAGAAAAATA 8087230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147697679690880