Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq8164 500 2e-137 seq7 181 3e-41 seq5 174 5e-39 >seq8164 Length=157712 Score = 500 bits (554), Expect = 2e-137 Identities = 712/996 (71%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| |||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 371 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 430 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| || ||||||||||||| ||| || ||| | | || Sbjct 431 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 490 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || || || || ||||||||||| | ||| ||||||||||| ||||| | Sbjct 491 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 550 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | ||||| ||| || || | || || ||||| | || ||||| |||| | ||| | Sbjct 551 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 610 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||||| || || |||||||| Sbjct 611 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 670 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 ||||| || || | || ||||| || | || || | || |||||| |||| ||| Sbjct 671 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 730 Query 40884 GTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || |||| || | | |||| || ||||| || ||||||||| || | | Sbjct 731 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAC-CCATGCATAGCACTGAATAGGGAG 787 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || ||||| | ||| || ||||||||||| || |||||||| || Sbjct 788 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 847 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 |||||||| |||| |||||||||||| || || |||||||| |||||||| ||||| Sbjct 848 GCTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAA 907 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || || ||||| | |||||| | ||||| ||||| ||| |||| | |||||| Sbjct 908 AAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 967 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | ||||| ||| ||||| || | |||||| || | | | ||||||||||| | | Sbjct 968 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1027 Query 41181 CCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCG 41240 || ||| ||||| || | ||| ||||| | ||||| |||| ||| || || ||| Sbjct 1028 CCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1087 Query 41241 TTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATT 41300 ||||||| ||| || || | | | |||||||| || ||||| || || | || || Sbjct 1088 TTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATA 1147 Query 41301 GCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCG 41360 || |||| | |||| | || ||||| ||||||||||| || || | ||| || || Sbjct 1148 GCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCA 1207 Query 41361 GAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATG 41420 ||||| || ||||| || ||||| |||||||| || ||||| || || || || || || Sbjct 1208 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATA 1267 Query 41421 AA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 || ||| | || || || | ||| | || ||||| | ||||||||||| || | ||| Sbjct 1268 AATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1326 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || ||||| || ||||| || | |||||||||||| Sbjct 1327 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1362 >seq7 Length=17044513 Score = 181 bits (200), Expect = 3e-41 Identities = 362/543 (67%), Gaps = 45/543 (8%) Strand=Plus/Plus Query 40974 AATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 ||||||||||| || |||||||| || |||||||| |||| |||||||||||| | || Sbjct 8090844 AATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8090903 Query 41034 CTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAAT 41093 |||||||| |||||||||||||| || || ||||| | |||||| | || || Sbjct 8090904 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAAAAA 8090963 Query 41094 ACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCT 41153 ||||| ||| |||| | |||||| ||||| ||| ||||| || | |||||| Sbjct 8090964 ACAGCAGTAGCAGCTGCAACATGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCC 8091023 Query 41154 AGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGA 41213 || | | | ||||||||||| | ||| ||| |||| || | ||| || || Sbjct 8091024 AGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTATACCAAGTAAGAACTGT 8091083 Query 41214 AAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCC 41273 | ||||| |||| ||| || || || || |||||| Sbjct 8091084 AGAACAATTAGTTCATAAGGACCACCATT-----------------GTGTGC-------- 8091118 Query 41274 CAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATA 41333 ||| || || || ||||| | |||| | || ||||| ||| Sbjct 8091119 ------------AAA------CCTATAGCTATAGAGGTAGGAATAATGGCACCAGAAATA 8091160 Query 41334 ATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACA 41393 |||||||| | || | ||| || || ||||| | ||||| || ||||| |||||||| Sbjct 8091161 ATATTGTTTCTATAAAGTAAAGATCCAGAAACATGTTCACGAATACCATCAATATCTACT 8091220 Query 41394 GGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAAT 41452 || ||||| | || || || || || || |||| || || || | ||| | || || Sbjct 8091221 GGAGGTGCAACAATGAAAGCAATAATAAATACAT-AAGTTGCGGTCAATAAAGTAGGGAT 8091279 Query 41453 CATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACA 41512 ||| | ||||||||||| || | ||| || |||| || |||||||| | ||||||||| Sbjct 8091280 CATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAGTGCTAGTTATCCAGTTACA 8091339 Query 41513 AAA 41515 ||| Sbjct 8091340 AAA 8091342 Score = 113 bits (124), Expect = 1e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 40974 AATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 |||| |||||| || |||||||| || |||||||| |||| |||||||||||| | || Sbjct 8087067 AATGAGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAATACCG 8087126 Query 41034 CTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAAT 41093 |||||||| |||||||||||||| || || ||||| | |||||| | ||||| Sbjct 8087127 GAGATTCCTAGGGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATATATCAAGAAA 8087186 Query 41094 ACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 ||||| ||| |||| | ||||||| ||||| Sbjct 8087187 ACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 8087221 >seq5 Length=26133890 Score = 174 bits (192), Expect = 5e-39 Identities = 234/326 (72%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| |||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 9071548 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 9071489 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| || |||||||||| || ||| || ||| | | || Sbjct 9071488 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAATTATTAATTACACGACCCTGACTATCA 9071429 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || || || || ||||||||||| | ||| ||||||||||| ||||| | Sbjct 9071428 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 9071369 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | ||||| ||| || || | || || ||||| | || || || |||| | ||| | Sbjct 9071368 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGAGAA 9071309 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||| ||| ||||||||| || || | || ||||| ||||| || || |||||||| Sbjct 9071308 TTGTCGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 9071249 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAA 40849 ||||| || || | || ||||| || Sbjct 9071248 TTATAGGTTTCTTCCTCTTGACCGAA 9071223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143688468411576